View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_25 (Length: 457)

Name: NF7607_low_25
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_25
NF7607_low_25
[»] chr5 (4 HSPs)
chr5 (46-457)||(17844942-17845347)
chr5 (348-427)||(38104979-38105058)
chr5 (16-46)||(17845362-17845392)
chr5 (347-423)||(30291140-30291217)
[»] chr1 (1 HSPs)
chr1 (144-203)||(26234942-26235001)
[»] chr7 (1 HSPs)
chr7 (344-427)||(425933-426016)
[»] chr8 (2 HSPs)
chr8 (389-427)||(4389819-4389857)
chr8 (145-203)||(37672623-37672681)
[»] chr6 (2 HSPs)
chr6 (377-425)||(33890659-33890707)
chr6 (389-432)||(17241391-17241434)
[»] chr4 (3 HSPs)
chr4 (389-432)||(47399404-47399447)
chr4 (343-401)||(46860271-46860329)
chr4 (390-431)||(19039652-19039693)
[»] chr3 (1 HSPs)
chr3 (390-430)||(46434750-46434790)


Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 46 - 457
Target Start/End: Complemental strand, 17845347 - 17844942
Alignment:
Q  46 tgatatatcaatggaattttgaaacatgtggtcaagactcatgttgttattccttctaaactcagtttcaaaaccaaatttatagttacttactaccaca 145  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17845347 tgatatatcaatggaattttgaaacatgtggtcgagactcatgttgttattccttctaaactcagtttcaaaaccaaatttatagttacttactaccgca 17845248  T
Q  146 gaacagaattctagaacatgaagagggacaacgtaaatgaatccaagttgaaccaaaacatgggacattaataatgtatgagaagagtgtccccagcaat 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17845247 gaacagaattctagaacatgaagagggacaacgtaaatgaatccaagttgaaccaaaacatgggacattaataatgtatgagaagagtgtccccagcaat 17845148  T
Q  246 taactttagatgcagacaagcatagcataattgaaaccaaccatacgtccttgacagataattacaataacaatttcatcaacgcagaaaaattgtcaat 345  Q
    ||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17845147 taactttagatgcagacaag-----cataattgaaaccaaccatacgtccttgacagataattacaattacaatttcatcaacgcagaaaaattgtcaat 17845053  T
Q  346 agaaatagcttattcataagcgattatatattaagtgtttaatctataagctgcaaaataagttacttatccaaacagggccataattatagatgcaagc 445  Q
    ||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17845052 agaaatagcttatt-tgcagctattatatattaagtgtttaatctataagctgcaaaataagttacttatccaaacagggacataattatagatgcaagc 17844954  T
Q  446 ttcatatataat 457  Q
    |||| |||||||    
T  17844953 ttcacatataat 17844942  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 427
Target Start/End: Original strand, 38104979 - 38105058
Alignment:
Q  348 aaatagcttattcataagcgattatatattaagtgtttaatctataagctgcaaaataagttacttatccaaacagggcc 427  Q
    ||||||||||||||||| || ||||||  |||  | |||  |||||||||||||||||||||  ||||||||||||||||    
T  38104979 aaatagcttattcataaccgcttatatcataaacgcttacgctataagctgcaaaataagttgtttatccaaacagggcc 38105058  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 17845392 - 17845362
Alignment:
Q  16 taaggtgaacatatacaaaaaagtgataaat 46  Q
    |||||||||||||||||||||||||||||||    
T  17845392 taaggtgaacatatacaaaaaagtgataaat 17845362  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 423
Target Start/End: Complemental strand, 30291217 - 30291140
Alignment:
Q  347 gaaatagcttattcataagcgattat-atattaagtgtttaatctataagctgcaaaataagttacttatccaaacag 423  Q
    ||||||| |||| |||||||| |||| ||  ||||||||||  |||||||||||||| ||||||  ||||||||||||    
T  30291217 gaaataggttatgcataagcgtttatcatgataagtgtttatgctataagctgcaaattaagttggttatccaaacag 30291140  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 26235001 - 26234942
Alignment:
Q  144 cagaacagaattctagaacatgaagagggacaacgtaaatgaatccaagttgaaccaaaa 203  Q
    ||||| ||||||| ||||||||||||||||||  |||||||||||||||||||| |||||    
T  26235001 cagaaaagaattcaagaacatgaagagggacagtgtaaatgaatccaagttgaatcaaaa 26234942  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 427
Target Start/End: Original strand, 425933 - 426016
Alignment:
Q  344 atagaaatagcttattcataagcgattatatattaagtgtttaatctataagctgcaaaataagttacttatccaaacagggcc 427  Q
    |||||| || ||| ||||||||  |||||| | |||| | |||  |||||||||||||||||||||| ||||||||||||||||    
T  425933 atagaattaacttgttcataagaaattatacaataagcgcttatgctataagctgcaaaataagttatttatccaaacagggcc 426016  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 427
Target Start/End: Complemental strand, 4389857 - 4389819
Alignment:
Q  389 ctataagctgcaaaataagttacttatccaaacagggcc 427  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  4389857 ctataagctgcaaaataagttatttatccaaacagggcc 4389819  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 37672681 - 37672623
Alignment:
Q  145 agaacagaattctagaacatgaagagggacaacgtaaatgaatccaagttgaaccaaaa 203  Q
    ||||||||||||||| | ||||||||||| |  |||||| ||||||||||||| |||||    
T  37672681 agaacagaattctaggaaatgaagagggatagtgtaaataaatccaagttgaatcaaaa 37672623  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 33890707 - 33890659
Alignment:
Q  377 taagtgtttaatctataagctgcaaaataagttacttatccaaacaggg 425  Q
    ||||||||||  |||||||||||||||||||||| ||||||||| ||||    
T  33890707 taagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 33890659  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Original strand, 17241391 - 17241434
Alignment:
Q  389 ctataagctgcaaaataagttacttatccaaacagggccataat 432  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||    
T  17241391 ctataagctgccaaatatgttgcttatccaaacagggccataat 17241434  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 47399447 - 47399404
Alignment:
Q  389 ctataagctgcaaaataagttacttatccaaacagggccataat 432  Q
    |||||||||||||| ||||||  |||||||||||||||||||||    
T  47399447 ctataagctgcaaactaagttgtttatccaaacagggccataat 47399404  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 46860329 - 46860271
Alignment:
Q  343 aatagaaatagcttattcataagcgattatatattaagtgtttaatctataagctgcaa 401  Q
    |||||||||| |||||||||||||  ||||||  ||||||||||  |||||||||||||    
T  46860329 aatagaaatatcttattcataagcacttatatcataagtgtttatgctataagctgcaa 46860271  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Complemental strand, 19039693 - 19039652
Alignment:
Q  390 tataagctgcaaaataagttacttatccaaacagggccataa 431  Q
    ||||||||||||| ||||||  ||||||||||||||||||||    
T  19039693 tataagctgcaaattaagttgtttatccaaacagggccataa 19039652  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 46434750 - 46434790
Alignment:
Q  390 tataagctgcaaaataagttacttatccaaacagggccata 430  Q
    ||||||||||||||||||||  ||||||||||| |||||||    
T  46434750 tataagctgcaaaataagttgtttatccaaacaaggccata 46434790  T

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