View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_33 (Length: 430)
Name: NF7607_low_33
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Original strand, 13652743 - 13653156
Alignment:
| Q |
13 |
aaaatggaccataacgttttagacaaagttttacaactaacccaagcatcacttaaaggcaatgcagtaatactcaacacatttgaagatctagagtccc |
112 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13652743 |
aaaatggaccatatcattttagacaaagttttacaactaacccaagcatcacttaaaggcaatgcagtaatactcaacacatttgaagatttagagtccc |
13652842 |
T |
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| Q |
113 |
caattctctcccaaattcgtctccacttccccaaactctacactattggcccacttcaccaccacctcaataccatgnnnnnnncaacatcatcatcttt |
212 |
Q |
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| T |
13652843 |
caattctctcccaaattcgtctccacttccccaaactctacactattggcccacttcaccaccacctcaataccatgaaaaaaacaacatcatcatcttt |
13652942 |
T |
|
| Q |
213 |
caactccaatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaaca |
312 |
Q |
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| T |
13652943 |
caactccaatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaaca |
13653042 |
T |
|
| Q |
313 |
atgacgagagaagaaatacttgagttttggcacggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacac |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13653043 |
atgacgagagaagaaatacttgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagac |
13653142 |
T |
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| Q |
413 |
taataaaagaactt |
426 |
Q |
| |
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|||||||||||||| |
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| T |
13653143 |
taataaaagaactt |
13653156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 60 - 408
Target Start/End: Original strand, 13658254 - 13658611
Alignment:
| Q |
60 |
atcacttaaaggcaatgcagtaatactcaacacatttgaagatctagagtccccaattctctcccaaattcgtctccacttccccaaactctacactatt |
159 |
Q |
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||||||||||||||||||| ||||||||||||| || || ||||||| |||||| |||||| ||||||||||| || ||| ||||||||||| ||| |
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| T |
13658254 |
atcacttaaaggcaatgcactaatactcaacacgttcgagaatctagaatccccagctctctctcaaattcgtcttcatgcccctaaactctacaccatt |
13658353 |
T |
|
| Q |
160 |
ggcccacttcaccaccacctcaataccatgnnnnnnncaacatcatcatctttcaactcc---------aatttcttcaaagtggatagaacctgcatga |
250 |
Q |
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||||| ||||||||||||||||| |||| || |||| ||||| | | |||| ||||||||| ||||||||||||| ||||||| |
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| T |
13658354 |
ggccctcttcaccaccacctcaacaccacaaaaaaaacatcatcgtcatcgtcctcctcctccaagagcaatttcttcgaagtggatagaacttgcatga |
13658453 |
T |
|
| Q |
251 |
catggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcacggttt |
350 |
Q |
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| T |
13658454 |
catggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaagggagaagaaatcattgagatttggcacggttt |
13658553 |
T |
|
| Q |
351 |
gttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaa |
408 |
Q |
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|| || ||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
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| T |
13658554 |
attgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaa |
13658611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 60 - 408
Target Start/End: Original strand, 13647726 - 13648083
Alignment:
| Q |
60 |
atcacttaaaggcaatgcagtaatactcaacacatttgaagatctagagtccccaattctctcccaaattcgtctccacttccccaaactctacactatt |
159 |
Q |
| |
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||||||||||| |||||| | ||||||||||||||||| |||||||| || || | ||||||||||||||| | |||||||| ||||||||||| || |
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| T |
13647726 |
atcacttaaagcaaatgcattcatactcaacacatttgaggatctagaagcctcagtcctctcccaaattcgtattcacttccctaaactctacaccata |
13647825 |
T |
|
| Q |
160 |
ggcccacttcaccaccacctcaataccatgnnnnnnncaacat---catcatctttcaactc------caatttcttcaaagtggatagaacctgcatga |
250 |
Q |
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| T |
13647826 |
ggccctcttcaccacctcctcaatacaaccaaaaaatcatcatttccatcatcttttttctctaagagcaatttcttcaaagtggatagaacctgcatgg |
13647925 |
T |
|
| Q |
251 |
catggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcacggttt |
350 |
Q |
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| ||||| || |||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||| ||||||||||||| ||||| ||||||| ||||| |
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| T |
13647926 |
cgtggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattgagatttggcatggttt |
13648025 |
T |
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| Q |
351 |
gttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaa |
408 |
Q |
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|| || ||||||||| || || ||||||||||| ||||||||||||||||||||| |
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| T |
13648026 |
attgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaa |
13648083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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