View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_35 (Length: 423)
Name: NF7607_low_35
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 136 - 406
Target Start/End: Original strand, 26763783 - 26764052
Alignment:
| Q |
136 |
gaataatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgcttttatttctatctttcaattcttagttcaaaagc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26763783 |
gaataatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgcttttatttctatctttcaattcttagttcaaaagc |
26763882 |
T |
|
| Q |
236 |
cctgctataaatgataattgtgtttcttataaaaatttaaaacttcttgtttcaggaagnnnnnnnncttgtaaacaaaaattatcgcaggcaaaatctt |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26763883 |
cctgctataaatgataattgtgtttcttataaaaatttaaaacttcttgtttcaggaag-aaaaaaacttgtaaacaaaaattatcgcaggcaaaatctt |
26763981 |
T |
|
| Q |
336 |
gataaaatggtgtgattgaaaatggccatggacgaaacgcttagcataaaatggtgtgatgactgtgttat |
406 |
Q |
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| T |
26763982 |
gataaaatggtgtgattgaaaatggccatggacgaaacgcttagcataaaatagtgtgatgactgtgttat |
26764052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 32138173 - 32138456
Alignment:
| Q |
10 |
catcatcatgtatcccttccctcctccttttctcacacaattatattttatgcgatcatatgcagacgtttcctgcttgggtttcattgtatcatacctc |
109 |
Q |
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| T |
32138173 |
catcatcacatattccttccctcctccttttgtcacacatttatattttatgtgatcatgtgctgacgtttcctacttgggtttcattacattatgcttc |
32138272 |
T |
|
| Q |
110 |
ttgatttttctttattt----gtatattcagaataatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgctttta |
205 |
Q |
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| T |
32138273 |
ttggtttttctttatttatttgtatatt-----tgatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgcttttg |
32138367 |
T |
|
| Q |
206 |
tttctatctttcaattcttagttcaaaagccctgctataaatgataattgtgtttcttataaaaatttaaaacttcttgtttcaggaag |
294 |
Q |
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||||||| ||||||||||| |||||| | ||| | | ||||| | ||||||||| ||| |||||| ||||||||| ||||||| |||| |
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| T |
32138368 |
tttctatgtttcaattctttgttcaacatccccgttgtaaataagaattgtgttccttgtaaaaaattaaaactttctgtttcatgaag |
32138456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 26763616 - 26763741
Alignment:
| Q |
10 |
catcatcatgtatcccttccctcctccttttctcacacaattatattttatgcgatcatatgcagacgtttcctgcttgggtttcattgtatcatacctc |
109 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
26763616 |
catcatcatatatcccttccctcctccttttctcgcacaattatattttatgcgatcatatgcaaacgtttccttcttgggtttcattgtatcatacctc |
26763715 |
T |
|
| Q |
110 |
ttgatttttctttatttgtatattca |
135 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26763716 |
ttgatttttctttatttgtatattca |
26763741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 34452670 - 34452806
Alignment:
| Q |
24 |
ccttccctcctccttttctcacacaattatattttatgcgatcatatgcagacgtttcctgcttgggtttcattgtatcatacctcttgatt--tttctt |
121 |
Q |
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||||||||||||||||| ||||||| |||||||||||| |||| ||||| |||||||||| ||||||||||||| || || |||||||||| ||| || |
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| T |
34452670 |
ccttccctcctccttttgtcacacatttatattttatgtgatcgtatgctgacgtttcctacttgggtttcattacattatgcctcttgatttctttatt |
34452769 |
T |
|
| Q |
122 |
tatttgtatattcagaataatgcaaatgggttcttta |
158 |
Q |
| |
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|| ||||||||||| ||| |||||||||||||||||| |
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| T |
34452770 |
taattgtatattcaaaatgatgcaaatgggttcttta |
34452806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 19764123 - 19763854
Alignment:
| Q |
27 |
tccctcctccttttctcacacaattatattttatgcgatcatatgcagacgtttcctgcttgggtttcattgtatcatacctcttgattt--ttctttat |
124 |
Q |
| |
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||||||||||||| ||||||| |||||||||||| |||||||||| |||||||||| ||||||||||||| || || ||||||||||| || |||| |
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| T |
19764123 |
tccctcctcctttggtcacacatttatattttatgtgatcatatgctgacgtttcctacttgggtttcattacattatgcctcttgatttctttatttaa |
19764024 |
T |
|
| Q |
125 |
ttgtatattcagaataatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgcttttatttctatctttcaattctt |
224 |
Q |
| |
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|||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
19764023 |
ttgtttattcaaaatgatgcaaatgggttctttaattcattttactgtaaaataaataaattagagtgagcaatgcttttgtttctatgtttcaattctt |
19763924 |
T |
|
| Q |
225 |
agttcaaaagccctgctataaatgataattgtgtttcttataaaaatttaaaacttcttgtttcaggaag |
294 |
Q |
| |
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|||||| | ||| ||| ||||| | ||||||||| ||| ||||||||||||||||| ||||||| |||| |
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| T |
19763923 |
tgttcaacatccccgctgtaaataagaattgtgttccttgtaaaaatttaaaacttcctgtttcatgaag |
19763854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 20796209 - 20795940
Alignment:
| Q |
24 |
ccttccctcctccttttctcacacaattatattttatgcgatcatatgcagacgtttcctgcttgggtttcattgtatcatacctcttgatttttcttta |
123 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||| |||||| ||| |||||||||| | ||||||||||| || || |||||||||||||||||| |
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| T |
20796209 |
ccttccctcctccttttgtcacacatttatattttatgtgatcatgtgctgacgtttcctacatgggtttcattacattatgcctcttgatttttcttta |
20796110 |
T |
|
| Q |
124 |
ttt----gtatattcagaataatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgcttttatttctatctttcaa |
219 |
Q |
| |
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||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
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| T |
20796109 |
tttatttgtatatt-----tgatgcaaatgggttctttaattcattttactgtaaaagaaataaattagattgagcaatgcttttgtttctatgtttcaa |
20796015 |
T |
|
| Q |
220 |
ttcttagttcaaaagccctgctataaatgataattgtgtttcttataaaaatttaaaacttcttgtttcaggaag |
294 |
Q |
| |
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||||| |||||| | ||| | ||||| | ||||||||| ||| |||||||||||||||| ||||||| |||| |
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|
| T |
20796014 |
ttctttgttcaacatccccattgtaaataagaattgtgttccttgtaaaaatttaaaactttctgtttcatgaag |
20795940 |
T |
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