View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_37 (Length: 405)
Name: NF7607_low_37
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 224 - 391
Target Start/End: Complemental strand, 4670066 - 4669899
Alignment:
| Q |
224 |
ttgttggtcgtgtagggataaagggacagtggtaccaagtgcaatacatggtgggtctacacataatttgtatgcattggggatgctacaaccatgtgat |
323 |
Q |
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| T |
4670066 |
ttgttggtcgtgtagggataaagggacagtggtaccaagtgcaatacatggtgggtctacatataatttgtatgcattggggatgctacaaccatgtgat |
4669967 |
T |
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| Q |
324 |
gaaagaatgagctccttcaaaagagaaacaaaaagttataggggtaccagaagatggtatggatgatg |
391 |
Q |
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| T |
4669966 |
gaaagaatgagctccttcaaaagagaaacaaaaagttataggggtaccaaaagatggtatggatgatg |
4669899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 4670224 - 4670064
Alignment:
| Q |
19 |
gatagagtcgtactaacgatgcgtctacgacaaagatcgacaaaactgtagtgttgataagaactatgaacctaaaccttgtt-ttttgtgacaaaagtg |
117 |
Q |
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| T |
4670224 |
gatagagtcgtactaacgatgcgtctacgacaaagatcgacaaaactgtagtgttgataagaattatgaacctaaaccttgtttttttgtgacaaaagtg |
4670125 |
T |
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| Q |
118 |
ttttgtggactatggtctcaatggtcggcaagttgatcttcaaaccttgaatgttgcttgtgaaggtttg |
187 |
Q |
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| T |
4670124 |
ttttgtggact---------atggtcggcaagttgatcttcaaaccttgaatgtggcttgtgaaggtttg |
4670064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 4670923 - 4670688
Alignment:
| Q |
19 |
gatagagtcgtactaacgatgcgtctacgacaaagatcgacaaaactgtagtgttgataagaactatgaacctaaaccttgttttttg-tgacaaaagtg |
117 |
Q |
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| T |
4670923 |
gatagagtggtactaacaacgcgtctacgacaaagatcgacaaaactgtggtgtggataagagttatgaacctaaaccttgtttttttatgacaaaagtg |
4670824 |
T |
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| Q |
118 |
ttttgtggactatggtctcaatggtcggcaa----------gttgatcttcaaaccttgaatgttgcttgtgaaggtttgcgcgtatgtgcatggaagct |
207 |
Q |
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| T |
4670823 |
ttttttggacttcagtctcaaaggtcgacaaccattttaaagttgatcttcaaaccttgaaggttgcttgtgaaggtttgcacatatgtgcatggaagct |
4670724 |
T |
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| Q |
208 |
taccttgcaaagacgattgttggtcgtgtagggataaa |
245 |
Q |
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| T |
4670723 |
tacct--cacagacgattgttggtcgtgtagggttaaa |
4670688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 351
Target Start/End: Complemental strand, 10873093 - 10872953
Alignment:
| Q |
216 |
aaagacgattgttggtcgtgtagggataaagggacagtggtaccaagtgcaatacatggtgggtctacacataatttgtatgcattggggatg------- |
308 |
Q |
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| T |
10873093 |
aaagactattgttggttgtgtggggataaatggagagtagtaccaagtgcaatac---gagggtctacacataatttgtatgtattgtggatgctatgag |
10872997 |
T |
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| Q |
309 |
-ctacaaccatgtgatgaaagaatgagctccttcaaaagagaaa |
351 |
Q |
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| T |
10872996 |
tctacgaccatgtgatgaaagagtgtgctccttcaaaagagaaa |
10872953 |
T |
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