View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7607_low_38 (Length: 404)
Name: NF7607_low_38
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 81 - 395
Target Start/End: Complemental strand, 46677344 - 46677030
Alignment:
| Q |
81 |
taaaccattacgaaggcatagaaaatgaaacggtgtcttctggaaggaaacctgaactgccgagatgcacttcttctgggagccaagggcatcgcctgcc |
180 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46677344 |
taaactattacgaaggcatagaaaatgaaacggtgtcttctgaaaggaaacctgaactgccgagatgcacttcttatgggagccaagggcatcgcctgcc |
46677245 |
T |
|
| Q |
181 |
gcaggtccctgcatcaatggaaatacatttgcggccatccgagattgaagttgatgctgctgaagatatcactcagtcaccagttcacattgctggtgaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46677244 |
gcaggtccctgcatcaatggaaatacatttgcggccatccgagattgaagttgatgctgctgaagatatcactcagtcaccagttcacattgctggtgaa |
46677145 |
T |
|
| Q |
281 |
gatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattatacct |
380 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46677144 |
gatttctgtcagagtacccccaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattatacct |
46677045 |
T |
|
| Q |
381 |
tagttttcaactttc |
395 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
46677044 |
tagtttttaactttc |
46677030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 46677618 - 46677541
Alignment:
| Q |
13 |
aaaatctgatgagaggaatgctagtaatgagcagccattgcttccagacttgaatgaacttccagacttaaaccatta |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
46677618 |
aaaatctgatgagaggaatgctagtaatgagcagccattgcttccagacttgaatgaacttcaagacttaaactatta |
46677541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 370
Target Start/End: Complemental strand, 46685671 - 46685583
Alignment:
| Q |
280 |
agatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattat |
370 |
Q |
| |
|
|||||| |||||||||| ||| ||||||| |||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46685671 |
agatttatgtcagagtatcccacaaaggaaaaggaaagt--agtttttgattgtcgattccactgcttgataatctttattccattattat |
46685583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 46704077 - 46703980
Alignment:
| Q |
60 |
acttgaatgaacttccagacttaaaccattacgaaggcatagaaaatgaaacggtgtcttctggaaggaaacctgaactgccgagatgcacttcttct |
157 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||||||||||||||||||| | || ||||| ||||||||||||| ||||| ||||||| |||| |
|
|
| T |
46704077 |
acttgaatgcacttccagccttaaatcattacgaaggcatagaaaatgaaaagatgccttctcaaaggaaacctgaatcaccgagctgcacttattct |
46703980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 370
Target Start/End: Complemental strand, 46703694 - 46703605
Alignment:
| Q |
281 |
gatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattat |
370 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||||||||||| || || ||||||||| | ||| |||||| ||||||||||||||| |
|
|
| T |
46703694 |
gatttttgtcagagtatccgcaaaaggaagaggaaagtgtagttgttgatcatcgattcctctgctctataatccttattccattattat |
46703605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 46703899 - 46703832
Alignment:
| Q |
241 |
tgaagatatcactcagtcaccagttcacattgctggtgaagatttctgtcagagtacccctaaaagga |
308 |
Q |
| |
|
||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||| || ||||||| |
|
|
| T |
46703899 |
tgaagatgtcaccaagtcatcagttcacattcctggtgaagatttctgtcagagtactcccaaaagga |
46703832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 369
Target Start/End: Complemental strand, 21728373 - 21728253
Alignment:
| Q |
249 |
tcactcagtcaccagttcacattgctggtgaagatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttg |
348 |
Q |
| |
|
|||||| |||| |||||| |||||| ||||||||||| ||||||| | |||| ||||||||||| ||| |||||| || ||||| ||||| | ||| |
|
|
| T |
21728373 |
tcactcggtcatcagttcccattgccggtgaagatttatgtcagactgcccccaaaaggaagagaaaatggtagttattgattattgattcttcttcttt |
21728274 |
T |
|
| Q |
349 |
ataatctttattccattatta |
369 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21728273 |
ataatctttattccattatta |
21728253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University