View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_40 (Length: 397)
Name: NF7607_low_40
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 39297239 - 39296886
Alignment:
| Q |
19 |
ttaacttatgttcatatgatggagggggtactcgttcacttggttcaaacgccttggtactgttagagaggttgaggaatgattagagacagacatcaac |
118 |
Q |
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| T |
39297239 |
ttaacttatgttcatatgatggaggggatactcgttcacttggttcaaacgccttggtactgttagagaggttgaggaatgattagagacagacatcaac |
39297140 |
T |
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| Q |
119 |
agagttgtattttgtgtttagaggaagttaaaactcatgagcatttgatgttgtcttgttgcagatcgtttactgtttggaagcatatattcaattagtg |
218 |
Q |
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| T |
39297139 |
agagttgtattttgtgtttagaggaagttaaaactcatgagcatttgatgttgtcttgttgcaaatcgtttactgtttggaagcatatatt-aattagtg |
39297041 |
T |
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| Q |
219 |
gttaggatgacagcccatgactttgaagtttgaacaatgatggtggaaatatttttggctgtcaaactttgctgaaatgaagaaaatgttaagaaattgt |
318 |
Q |
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| T |
39297040 |
gttaggatgacagcccatgactttgaagtttgaacaatgatggtggaaatatttttggctttcaaactttgctgaaatgaagaaaatgttaagaaattgt |
39296941 |
T |
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| Q |
319 |
ctcatttagattggttagcaactacttggtgtcggggacggacccacgtcaaaca |
373 |
Q |
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| T |
39296940 |
ctcatttagattggttagcaactacttggtgtcggggacggacccacgtcaaaca |
39296886 |
T |
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Back To:
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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 26876975 - 26876893
Alignment:
| Q |
19 |
ttaacttatgttcatatgatggagggggtactcgtt----cacttggttcaaacgccttggtactgttagagaggttgaggaa |
97 |
Q |
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| T |
26876975 |
ttaacttatgttcatacgatggagggggtactcgtttatgtacttggttcaaacgccttggtactgtcaaagaggttgaggaa |
26876893 |
T |
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