View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7607_low_43 (Length: 381)
Name: NF7607_low_43
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_43 |
 | |
|
| [»] scaffold0178 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 5287878 - 5288159
Alignment:
| Q |
1 |
aagtagaaatgaactcaaatcactcaactcattgttaaccagcattattcattaatgaagttttctttaacaatagtgggtgtactaaagctattaccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || ||||| |||||||| ||||||||||||| |
|
|
| T |
5287878 |
aagtagaaatgaactcaaatcactcaactcattgttaaccaacattattcattaatgaagtcatcttcaaaaatagcgggtgtaccaaagctattaccat |
5287977 |
T |
|
| Q |
101 |
catcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaaacaagtc |
200 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5287978 |
catcaacaaaagttggaagtccaccggttgtcaaatcctgtcaataagctagtaaaataatcttacaagctcgtgagaaagaagtgttaccaaacaagtc |
5288077 |
T |
|
| Q |
201 |
tattttgctcatatgaacttataatctatgctatccgctaaaaactcaaaaactgacctcgccaaacaacgactaaaatatg |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
5288078 |
tattttgctcatatgaacttataatctatgctatccgctaaaaactcaaaaactgacctcaccaaacaacgcctaaaatatg |
5288159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 25024405 - 25024562
Alignment:
| Q |
13 |
actcaaatcactcaactcattgttaaccagcattattcattaatgaagttttctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaag |
112 |
Q |
| |
|
|||| |||||| || |||||||||||||||| |||||||||||||||||| |||| |||||||| || || || ||||||||||||| |||||||||||| |
|
|
| T |
25024405 |
actcgaatcacgcatctcattgttaaccagcgttattcattaatgaagttatcttcaacaatagcggatgcaccaaagctattaccagcatcaacaaaag |
25024504 |
T |
|
| Q |
113 |
ttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagc |
170 |
Q |
| |
|
||||||||| || ||||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
25024505 |
ttggaagtccaccaattgtcaatccatgttaataagctagtaaaataatcttataagc |
25024562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 43727869 - 43727998
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| |||||||| ||||| || |||||||||||||||||||||||||||||||||| || ||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
43727869 |
tcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaactcatgtcaataagctagtaaaataatct |
43727968 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||||||| |||||||||| ||||||||| |
|
|
| T |
43727969 |
tataagcctatgagaaagaattgttaccaa |
43727998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 24276521 - 24276400
Alignment:
| Q |
73 |
atagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaa-accctgtcaataagctagtaaaataatcttataagct |
171 |
Q |
| |
|
|||| ||||| || |||||||| |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||| ||||||||||| || |
|
|
| T |
24276521 |
atagcgggtgcaccaaagctataaccaacatcaacaaaagttggaagtccaccagttgtcaagactctatcaataagctagtaaattaatcttataacct |
24276422 |
T |
|
| Q |
172 |
cgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||| |||||||| ||||||||| |
|
|
| T |
24276421 |
cgttagaaagaattgttaccaa |
24276400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 23180168 - 23180058
Alignment:
| Q |
86 |
taaagctattaccaacatcaacaaaagttggaagt---caactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaaga |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || |||| |||| | || ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23180168 |
taaagctattaccaacatcaacaaaagttggaagtactccacgggttatcaagctttgccaataagctagtaaaataatcttataagctcgtgagaaata |
23180069 |
T |
|
| Q |
183 |
agtgttaccaa |
193 |
Q |
| |
|
| ||||||||| |
|
|
| T |
23180068 |
attgttaccaa |
23180058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 9230279 - 9230403
Alignment:
| Q |
69 |
aacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataa |
168 |
Q |
| |
|
|||||||| ||||| || |||||||||| ||||||||||||||||||||| | | ||| |||| || |||||||||||||||||||||||||||||| |
|
|
| T |
9230279 |
aacaatagcgggtgcaccaaagctattatcaacatcaacaaaagttggaaatacatcagttatcaagccatgtcaataagctagtaaaataatcttataa |
9230378 |
T |
|
| Q |
169 |
gctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
|| ||| ||||| || ||||||||| |
|
|
| T |
9230379 |
gcccgttagaaaaaattgttaccaa |
9230403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 23804762 - 23804671
Alignment:
| Q |
102 |
atcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||||||||||||| |||||| | |||||||| | |||||||||||||||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
23804762 |
atcaacaaaagttagaagtccccccgttgtcaagctctgtcaataagctagtaaaataatcttataagtttgtgagaaagaatggttaccaa |
23804671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 363
Target Start/End: Complemental strand, 8035592 - 8035268
Alignment:
| Q |
21 |
cactcaactcattgttaaccagcattattcattaatgaagttttctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagt |
120 |
Q |
| |
|
|||||| ||| |||||||||| | |||||||||||||||||| |||| |||| ||| |||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
8035592 |
cactcatctcgttgttaaccaac-ttattcattaatgaagttatcttcaacagtagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagt |
8035494 |
T |
|
| Q |
121 |
caactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaaacaagtctattttgctcatatgaactt |
220 |
Q |
| |
|
| || |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8035493 |
ccacgagttgtcaa-----------------gtaaaataatcttatatgctcgtgagaaagaattgttaccaaacaagtctattttgatcatatgaactt |
8035411 |
T |
|
| Q |
221 |
ataatctatgctatccgctaaaaactcaaaaactgacctcgccaaacaacgactaaaatatgatatcatagtatacacaaagtcataataatcttgtgac |
320 |
Q |
| |
|
|||| ||| | |||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8035410 |
ataagctacgttatccgctaaaaactcgaaaactgacatcgccaaacaagacctaaattatgatatcatagtatacacaaagtcataataatcttgtgac |
8035311 |
T |
|
| Q |
321 |
ggagaagattacaaattttggtctgtttggatacataacttat |
363 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
8035310 |
ggagaaaattacaaattttggtctgtttggataaacaacttat |
8035268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 12180827 - 12180698
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| |||||||| ||||| | |||| |||||| ||||||||||||||||| ||||| | ||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
12180827 |
tcttcaacaatagcgggtgcgccaaagttattacaaacatcaacaaaagttgaaagtccatcagttatcaagccctgtcaataagctggtaaaataatct |
12180728 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||||||| ||||||||| || ||||||||| |
|
|
| T |
12180727 |
tataagcccgtgagaaaaaattgttaccaa |
12180698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 11970856 - 11970962
Alignment:
| Q |
87 |
aaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtg |
186 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| ||| |||||||||||| || |||| ||||||||||||| ||||||| ||||||||||| || |
|
|
| T |
11970856 |
aaagctattaccaacatcagcaaaagtatgaagtccactagttgtcaaaccccatctataatctagtaaaataattttataagtatgtgagaaagaattg |
11970955 |
T |
|
| Q |
187 |
ttaccaa |
193 |
Q |
| |
|
||||||| |
|
|
| T |
11970956 |
ttaccaa |
11970962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 24333554 - 24333716
Alignment:
| Q |
31 |
attgttaaccagcattattcattaatgaagttttctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttg |
130 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |||| ||||||| |||| || ||| |||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
24333554 |
attgttaaccagcgttattcattaacgaagttatcttcgacaatagcaggtgcaccaaaactattaccaacatcaataaaagttggaagtccaccggttg |
24333653 |
T |
|
| Q |
131 |
tcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
24333654 |
tcaagtcttgtcaataagctagtaaaataatcttataagcccgtgagaaagaattgttaccaa |
24333716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 28846494 - 28846623
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| ||||||| ||||| || |||||||| |||||||||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28846494 |
tcttcaacaatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagttgccaaaccctgtcaataagctagtaaaataatct |
28846593 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |
|
|
| T |
28846594 |
tataagtccgtgagaaagaattgttaccaa |
28846623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 13152688 - 13152567
Alignment:
| Q |
72 |
aatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagct |
171 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||||||||||| || ||| |||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
13152688 |
aatagagggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaagccatgtcaaaaagctagtaaaataatcttataagcc |
13152589 |
T |
|
| Q |
172 |
cgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
13152588 |
cgtgagaaagaattgttaccaa |
13152567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 27190667 - 27190770
Alignment:
| Q |
87 |
aaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| || |||||| ||||||||||||||||||||||||| || ||||||||| || |
|
|
| T |
27190667 |
aaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaagccatgtcaacaagctagtaaaataatcttataagcccgcgagaaagaattg |
27190766 |
T |
|
| Q |
187 |
ttac |
190 |
Q |
| |
|
|||| |
|
|
| T |
27190767 |
ttac |
27190770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 14446711 - 14446834
Alignment:
| Q |
69 |
aacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataa |
168 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14446711 |
aacaatattgggtacaccaaagctattaccaacatcaacaaaagttggaagtccaccagtagtcaagtcctgtcaataagctagtaaaataatcttataa |
14446810 |
T |
|
| Q |
169 |
gctcgtgagaaagaagtgttacca |
192 |
Q |
| |
|
| | ||||||||| |||||||| |
|
|
| T |
14446811 |
gtctgcgagaaagaattgttacca |
14446834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 9256294 - 9256348
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaa |
118 |
Q |
| |
|
|||| ||| |||| ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
9256294 |
tcttcaacgatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaa |
9256348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 51261875 - 51261981
Alignment:
| Q |
87 |
aaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| || |
|
|
| T |
51261875 |
aaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaaaccctgtcaataagctagtaaaataatataataagctcgtgaaaaagaattg |
51261974 |
T |
|
| Q |
187 |
ttaccaa |
193 |
Q |
| |
|
||||||| |
|
|
| T |
51261975 |
ttaccaa |
51261981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 3857178 - 3857050
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| |||||||| |||| || ||||||||||| ||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
3857178 |
tcttcaacaatagcaggtgcaccaaagctattacgaacatcaacaaaagttggaagtccaccagttatcaagccctgtcaataagctagtaaaataatct |
3857079 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgttacca |
192 |
Q |
| |
|
||||||| ||||||||| || |||||||| |
|
|
| T |
3857078 |
tataagcccgtgagaaataattgttacca |
3857050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 15667873 - 15667975
Alignment:
| Q |
91 |
ctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtgttac |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| |||| |||| ||||||||| |||||||||||||||||| | | |||||||||| |||||| |
|
|
| T |
15667873 |
ctattaccaacatcaacaaaagttggaagtccactagttatcaagccctatcaataagcaagtaaaataatcttataaacccatgagaaagaattgttac |
15667972 |
T |
|
| Q |
191 |
caa |
193 |
Q |
| |
|
||| |
|
|
| T |
15667973 |
caa |
15667975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 31944489 - 31944618
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||||||||| ||||||||||||||||| || ||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
31944489 |
tcttcaacaatagcgggtgcatgaaagctattaccaacattaacaaaagttggaagtccaccagttatcaagccctgccaataagctagtaaaataatct |
31944588 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
31944589 |
tataagctcgtgagaaagaattgttaccaa |
31944618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 51379502 - 51379594
Alignment:
| Q |
52 |
ttaatgaagttttctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaa |
144 |
Q |
| |
|
||||||||||| |||| |||||||| |||| || ||||||||||||||||||||||||||||||||||| || ||||||||| |||| |||| |
|
|
| T |
51379502 |
ttaatgaagttgtcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaagccctatcaa |
51379594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 24104659 - 24104598
Alignment:
| Q |
108 |
aaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataag |
169 |
Q |
| |
|
|||||||||||||| || ||| |||| | ||| |||||||||||||||| ||||||||||| |
|
|
| T |
24104659 |
aaaagttggaagtccaccagttatcaagctctgccaataagctagtaaaagaatcttataag |
24104598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 12539447 - 12539576
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || ||| |||| || || |||||||||||||||| ||||| |
|
|
| T |
12539447 |
tctttaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaagccttgccaataagctagtaaaagaatct |
12539546 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |
|
|
| T |
12539547 |
tataagcccgtgagaaagaattgttaccaa |
12539576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 34317769 - 34317640
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||| || ||| |||| | ||||||||||||||||||| ||||| |
|
|
| T |
34317769 |
tcttcaacaatagcgggtgaaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaagctttgtcaataagctagtaaaagaatct |
34317670 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||||| | |||||||||| ||||||||| |
|
|
| T |
34317669 |
tataaatccatgagaaagaattgttaccaa |
34317640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 8785656 - 8785784
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||| ||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
8785656 |
tcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccactagttatcaaaccccgttaataagctagtaaaataatct |
8785755 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||||||| |||||||||| ||||||||| |
|
|
| T |
8785756 |
tataagc-aatgagaaagaattgttaccaa |
8785784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 11852569 - 11852717
Alignment:
| Q |
45 |
ttattcattaatgaagttttctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaa |
144 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| || ||| ||||||| ||||||||||||||| || || | |||||||| |||||||| |
|
|
| T |
11852569 |
ttattcattaatgaagttatcttcaacaatagtgggtgcaccaaaactattactaacatcaacaaaagtgaaaaatccatcagttgtcaagtcctgtcaa |
11852668 |
T |
|
| Q |
145 |
taagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
11852669 |
taagctagtaaaataatcttataagtccgtgagaaagaattattaccaa |
11852717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 27169089 - 27168971
Alignment:
| Q |
72 |
aatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagct |
171 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
27169089 |
aatagcgggtgtaccaaagctattaccaacatcaacaaaagatggaagtccaccagttatcaagtcttgtcaataagctagtaaaataatcttataagcc |
27168990 |
T |
|
| Q |
172 |
cgtgagaaagaagtgttac |
190 |
Q |
| |
|
| ||||||| || |||||| |
|
|
| T |
27168989 |
catgagaaataattgttac |
27168971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 3055354 - 3055484
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaa-gttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatc |
162 |
Q |
| |
|
|||| |||||||| ||||| || |||||||||| ||||||||||||| | | ||||| ||| ||| |||| || |||||||||||||||||||||||| |
|
|
| T |
3055354 |
tcttcaacaatagcgggtgcaccaaagctattatcaacatcaacaaattggtagaagtaaaccagttatcaagccatgtcaataagctagtaaaataatc |
3055453 |
T |
|
| Q |
163 |
ttataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |
|
|
| T |
3055454 |
ttataagcccgtgagaaagaattgttaccaa |
3055484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 23244834 - 23244743
Alignment:
| Q |
102 |
atcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||||||||||||||||| || | | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
23244834 |
atcaacaaaagttggaattccattcgttgtcaagccctgtcaataagctagtaaaataatcttataagccaatgagaaagaattgttaccaa |
23244743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 19790233 - 19790287
Alignment:
| Q |
168 |
agctcgtgagaaagaagtgttaccaaacaagtctattttgctcatatgaacttat |
222 |
Q |
| |
|
|||| |||||||| | ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
19790233 |
agcttgtgagaaatgattgttaccaaacaaatctattttggtcatatgaacttat |
19790287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 14498771 - 14498900
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| ||||||||||||||||||||||| || || |||| || ||||||||||||||||||||||||| |
|
|
| T |
14498771 |
tcttcaacaatagcgggtgtaccaaagctattatcaacatcaacaaaagttggaagtacaccagtcatcaagccatgtcaataagctagtaaaataatct |
14498870 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
14498871 |
tataagctcgtgagaaagatttgttaccaa |
14498900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 30559307 - 30559182
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||||||||||||||||||||| ||||| || ||||||||| | ||||||||||||||||||||| ||| |
|
|
| T |
30559307 |
tcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttgaaagtccaccggttgtcaagctttgtcaataagctagtaaaatattct |
30559208 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgtta |
189 |
Q |
| |
|
|||||||||| ||||||||| ||||| |
|
|
| T |
30559207 |
tataagctcgcgagaaagaattgtta |
30559182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 48606891 - 48606785
Alignment:
| Q |
87 |
aaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtg |
186 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||| | ||||| ||||||| || |
|
|
| T |
48606891 |
aaagctattaccaaaatcaacaaaagttggaagtccactagttatcaaaccctgtcaatattctagtaaaataatcttatatgttcgtgggaaagaattg |
48606792 |
T |
|
| Q |
187 |
ttaccaa |
193 |
Q |
| |
|
|||||| |
|
|
| T |
48606791 |
ctaccaa |
48606785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 30054738 - 30054844
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| |||||||| ||||| | |||| | ||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
30054738 |
tcttcaacaatagcgggtgcattaaaaccattaccaacatcaacaaaagttggaagtccaccggttgtcaagccctaccaataagctagtaaaataatct |
30054837 |
T |
|
| Q |
164 |
tataagc |
170 |
Q |
| |
|
|| |||| |
|
|
| T |
30054838 |
tacaagc |
30054844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 9636995 - 9637123
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| |||||||| ||||| || ||||| ||||| ||||||||||||||||| ||||| || |||| | || ||||| |||||||||||| ||||||||| |
|
|
| T |
9636995 |
tcttcaacaatagcgggtgcaccaaagccattactaacatcaacaaaagttgaaagtccaccggttataaagccctgccaataagctagt-aaataatct |
9637093 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
|||||| |||||||||| || ||||||||| |
|
|
| T |
9637094 |
tataagttcgtgagaaataattgttaccaa |
9637123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 52754086 - 52754030
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagt |
120 |
Q |
| |
|
|||| |||||||| ||||| || |||||||||| |||||| ||||||||||| |||| |
|
|
| T |
52754086 |
tcttcaacaatagcgggtgcaccaaagctattatcaacattaacaaaagttgaaagt |
52754030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 17613 - 17738
Alignment:
| Q |
64 |
tctttaacaatagtgggtgtactaaagctattaccaacatcaacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatct |
163 |
Q |
| |
|
|||| ||||| |||||||| || ||| ||||||||||||||||||||||||||||||| || ||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
17613 |
tcttcaacaaaagtgggtgcaccaaaactattaccaacatcaacaaaagttggaagtccaccagttatcaatctctgtcaataagctagtaaaataatct |
17712 |
T |
|
| Q |
164 |
tataagctcgtgagaaagaagtgtta |
189 |
Q |
| |
|
||||||||| | ||||| || ||||| |
|
|
| T |
17713 |
tataagctcattagaaataattgtta |
17738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 435617 - 435528
Alignment:
| Q |
104 |
caacaaaagttggaagtcaactggttgtcaaaccctgtcaataagctagtaaaataatcttataagctcgtgagaaagaagtgttaccaa |
193 |
Q |
| |
|
||||||||||| |||||| || |||||||| || |||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
435617 |
caacaaaagttcgaagtccaccagttgtcaacccatgtcaataagttagtaaaataatcttataagctcgtgagaaaaaattgttaccaa |
435528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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