View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_46 (Length: 375)

Name: NF7607_low_46
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_46
NF7607_low_46
[»] chr7 (6 HSPs)
chr7 (1-362)||(26618451-26618810)
chr7 (1-285)||(26620423-26620697)
chr7 (1-241)||(26607885-26608122)
chr7 (297-358)||(26620735-26620796)
chr7 (1-239)||(8248594-8248816)
chr7 (297-362)||(26608204-26608268)
[»] chr4 (4 HSPs)
chr4 (4-285)||(37744396-37744676)
chr4 (15-347)||(37750312-37750646)
chr4 (4-298)||(24558346-24558639)
chr4 (298-347)||(37744702-37744751)
[»] chr2 (5 HSPs)
chr2 (1-347)||(27150560-27150894)
chr2 (4-285)||(7702953-7703226)
chr2 (4-275)||(24479673-24479942)
chr2 (164-239)||(31481317-31481392)
chr2 (63-147)||(40016936-40017022)
[»] chr8 (3 HSPs)
chr8 (1-234)||(6223888-6224119)
chr8 (84-285)||(17633856-17634056)
chr8 (228-347)||(14998069-14998189)
[»] chr6 (3 HSPs)
chr6 (4-285)||(24631564-24631841)
chr6 (1-239)||(1943129-1943365)
chr6 (164-241)||(30129181-30129257)
[»] chr1 (4 HSPs)
chr1 (12-275)||(18308714-18308975)
chr1 (1-275)||(39367448-39367720)
chr1 (168-275)||(17113447-17113554)
chr1 (297-347)||(39367757-39367807)
[»] chr5 (1 HSPs)
chr5 (1-153)||(31571518-31571671)
[»] chr3 (1 HSPs)
chr3 (1-211)||(25338455-25338663)
[»] scaffold0002 (2 HSPs)
scaffold0002 (15-217)||(445602-445801)
scaffold0002 (249-301)||(445854-445906)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 26618451 - 26618810
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26618451 ctgttcagaaagtagcaacacttaaatcaataggattttgttgcttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 26618550  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  26618551 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgtttttgct--ctcacattccttctaaatacttgcagctagaagactt 26618648  T
Q  201 ttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatggttatttattattttt 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  26618649 ttgttgtttcaagtgaaactatgaaagatggtgttgcaagccaagaatatttttcttgcattagcttgcttagattccctcatggttatttattattttt 26618748  T
Q  301 tggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttgattt 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26618749 tggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttgattt 26618810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 26620423 - 26620697
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttca-tctctagcagaggtaagttatgctctatctttatatctcaatttttt 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||| ||| |||||||| ||||||| ||||||||||  ||||||||||    
T  26620423 ctgttcataaagtagcaacacttaaatcaataggattttgttgcttgtttcaatctttagtagaggtaaattatgctttatctttataaatcaatttttt 26620522  T
Q  100 agtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagact 199  Q
             ||||||| ||||| |||||||||||||||||||||||| ||||||          ||||||||||||||||||||||||||||||||||||    
T  26620523 ---------tggatttggttcaatcatttatacctcaaatttactttgattttgtttttgct--ctcacattccttctaaatacttgcagctagaagact 26620611  T
Q  200 tttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatgg 285  Q
    ||||||||||||| ||||  ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| || ||||||    
T  26620612 tttgttgtttcaaatgaagctatgaaagatgatgttgcaagccaagaagatttttgttgcattagctttcttagatcccctcatgg 26620697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26607885 - 26608122
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    |||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| || |||||||||||||||||||| |||||||    
T  26607885 ctgttctggaagtagcaacacttaaatcaataggattttgttgcttgcttcatctttagtagaggtaaattctgctctatctttatatctcattttttta 26607984  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
     ||| |||||||||| ||||| |||||||||| | ||||||||||||||||||          ||||||||||||||| |||||||||||||||||||||    
T  26607985 ttgattgttggatttggttcaatcatttatacgt-aaatttacttttattttg--tttttgctctcacattccttctacatacttgcagctagaagactt 26608081  T
Q  201 ttgttgtttcaagtgaaaatatgaaagatggtgttgcaagc 241  Q
    |||||||||||| ||||  ||||||||||||||||||||||    
T  26608082 ttgttgtttcaaatgaagctatgaaagatggtgttgcaagc 26608122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 26620735 - 26620796
Alignment:
Q  297 tttttggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttg 358  Q
    |||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||    
T  26620735 tttttggtggaaaaagtgattattactaggtttagttaggatatcttatttgtagtattttg 26620796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8248816 - 8248594
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttt- 99  Q
    ||||||| ||||||||||| ||||||  ||||||||||||||  ||||||      ||  | |||||| || ||||| || ||||||||| ||||||||     
T  8248816 ctgttcacaaagtagcaacccttaaagtaataggattttgtttcttgcttt-----taataaaggtaaattctgctccatttttatatcttaattttttt 8248722  T
Q  100 -agtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagac 198  Q
     || || | ||||||||  |||| ||| ||||||||||||||||||||||||             |||||||| |||||||||||||||||||||||||     
T  8248721 tagcgattattggatttgtttcaatcacttatacctcaaatttacttttatt-------------ctcacattacttctaaatacttgcagctagaagat 8248635  T
Q  199 ttttgttgtttcaagtgaaaatatgaaagatggtgttgcaa 239  Q
     ||||||| | ||||||||  ||| ||||||| | ||||||    
T  8248634 atttgttgctccaagtgaagctattaaagatgttattgcaa 8248594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 26608204 - 26608268
Alignment:
Q  297 tttttggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttgattt 362  Q
    ||||||||| ||||| |||||||| |||||||| |  |||||||||||||||||||||||||||||    
T  26608204 tttttggtgaaaaaa-tgattattactaggtttagttaggatatcttatttgtagtattttgattt 26608268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 37744396 - 37744676
Alignment:
Q  4 ttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaa-ttttttagt 102  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||||||| ||| | |||||| || ||| | |||||| |||||||| |||||||||    
T  37744396 ttcagaaagtagcaacacttaaatcaattggattttgtttcttgcttcatctttagtaaaggtaaattctgcaccatctttgtatctcaatttttttagt 37744495  T
Q  103 gaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactttt 202  Q
    || |||||||||  ||||| |||||||||||||||||||||||||||||||          ||||||||||||||||||||||||| |||||||||||||    
T  37744496 gattgttggattgggttcaatcatttatacctcaaatttacttttattttg--tttttgttctcacattccttctaaatacttgcacctagaagactttt 37744593  T
Q  203 gttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatgg 285  Q
    ||||||||||| |||  |||||||||||||||||| | |||| || ||||||||||||||||||||||||||| || ||||||    
T  37744594 gttgtttcaagagaagctatgaaagatggtgttgcgatccaaaaagatttttgttgcattagcttgcttagatcccctcatgg 37744676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 37750312 - 37750646
Alignment:
Q  15 gcaacacttaaatcaataggat----tttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttg 110  Q
    ||||||||||||| ||||||||    || |||  ||||||||||| ||  | |||||| || ||||| |||||||||||||||||||||||||| |||||    
T  37750312 gcaacacttaaattaataggatcgatttagttacttgcttcatctttactaaaggtaaattctgctccatctttatatctcaattttttagtgattgttg 37750411  T
Q  111 gatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttc 210  Q
    |||||  |||| | |||||||||||||||||||||||||||||          ||||||||||||||||||||||||| |||||||||||||||||||||    
T  37750412 gatttgattcaattatttatacctcaaatttacttttattttgtttttgtt--ctcacattccttctaaatacttgcaactagaagacttttgttgtttc 37750509  T
Q  211 aagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatggttatttattattttttggtggaaaa 310  Q
     || |||  |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  || |||||| || |  || ||||||| |||||||    
T  37750510 cagagaagctatgaaagatggtgttacaagccaagaagatttttgttgcattagcttgcttagaccccatcatggctaatgttttttttttgttggaaaa 37750609  T
Q  311 agtgattattgctaggtttggcgaggatatcttattt 347  Q
    | |||||||| |||||||| |  ||||||||||||||    
T  37750610 aatgattattactaggtttagttaggatatcttattt 37750646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 24558346 - 24558639
Alignment:
Q  4 ttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttat--gctctatctttatatctcaattttttag 101  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| || ||| | |||||| ||||  |||| |||||||||||||||| ||||||    
T  24558346 ttcagaaagtagcaacacttaaattaataggattttgttgcttgcttcacctttagtaaaggtaaattatatgctccatctttatatctcaatgttttag 24558445  T
Q  102 tgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttt 201  Q
     ||   |||||||| ||||| |||||||||||||||||||||||||||||||          |||||||||||||| ||||||| |||||| |||| |||    
T  24558446 agatcattggatttggttcaatcatttatacctcaaatttacttttattttg--tttttgtactcacattccttct-aatacttacagctaaaagatttt 24558542  T
Q  202 tgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagc-ttgcttagattccttcatggttatttattattt 298  Q
    ||||| |||||||||  | |||||||||| ||||||||| |||||| ||| ||||| || |||| ||||||||||||| |||||| || || ||||||    
T  24558543 tgttgcttcaagtgagca-atgaaagatgatgttgcaagtcaagaagattcttgtttcaatagctttgcttagattccctcatggctagtttttattt 24558639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 37744702 - 37744751
Alignment:
Q  298 ttttggtggaaaaagtgattattgctaggtttggcgaggatatcttattt 347  Q
    ||||||||||||||||||||||| |||||||| |   |||||||||||||    
T  37744702 ttttggtggaaaaagtgattattactaggtttagttgggatatcttattt 37744751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 27150560 - 27150894
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||||||||| || |||||||||||||||||||||||||||| ||| ||||||| ||| | |||||| || ||||| ||||||||||||||||||||||    
T  27150560 ctgttcagaaattaacaacacttaaatcaataggattttgttgcttggttcatctttagtaaaggtaaattttgctccatctttatatctcaatttttta 27150659  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
    |||| |||||||||| ||| | | |||||||||||||||||||||||||||||          |||||||| ||| ||||||||||||||||||||||||    
T  27150660 gtgattgttggatttggttaaattatttatacctcaaatttacttttattttg--tttttgttctcacatttcttttaaatacttgcagctagaagactt 27150757  T
Q  201 ttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatggttatttattatttt- 299  Q
    |||||||||| || |||  |||||||           |||||||||| || |||||||||||| ||||||||||| || |||||| || || |||||||     
T  27150758 ttgttgtttccagagaagctatgaaa-----------aagccaagaagatatttgttgcattatcttgcttagatcccctcatggctaatttttattttg 27150846  T
Q  300 ttggtggaaaaagtgattattgctaggtttggcgaggatatcttattt 347  Q
    ||||||||||||||||||||| ||||||||    ||||||||||||||    
T  27150847 ttggtggaaaaagtgattattactaggtttatttaggatatcttattt 27150894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 7703226 - 7702953
Alignment:
Q  4 ttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtg 103  Q
    |||||||||||| |||| ||||||||||||||||||| |   |||||||||| ||| | |||||| || ||||| || |||||||||||||||| |||||    
T  7703226 ttcagaaagtagaaacatttaaatcaataggattttgct---tgcttcatctttagtaaaggtaaattctgctccatttttatatctcaattttctagtg 7703130  T
Q  104 aatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttg 203  Q
    | |||||||||| ||||| | |||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||||||||||||||    
T  7703129 attgttggatttggttcaattatttatacctcaaatttacttttattttg--tttttgttctcacgttccttctaaatacttgcagctagaagacttttg 7703032  T
Q  204 ttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatgg 285  Q
    ||||||| || |||  ||||||||||||| |||||| | |||   |||||||||||||||||||| ||||||||| ||||||    
T  7703031 ttgtttccagagaagctatgaaagatggttttgcaaacaaag---atttttgttgcattagcttggttagattccctcatgg 7702953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 275
Target Start/End: Complemental strand, 24479942 - 24479673
Alignment:
Q  4 ttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtg 103  Q
    |||||||||||||||||  |||||||||| ||||  |||| ||||||||||| |||   || ||| || | ||  |||||||||||||||||||||||||    
T  24479942 ttcagaaagtagcaacatataaatcaatatgattaagttgcttgcttcatctttagttaagctaaattctactacatctttatatctcaattttttagtg 24479843  T
Q  104 aatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttg 203  Q
    | | ||||||||  |||| |||||||||||||||||||||||||| |||            ||| ||||| |||||||||||| ||||||||||||||||    
T  24479842 attattggatttgattcaatcatttatacctcaaatttacttttactttatttttgtta--tcatattccatctaaatacttgtagctagaagacttttg 24479745  T
Q  204 ttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagat 275  Q
    ||| ||||||||||  ||| |||||||||||||||| | ||||| || ||||||||||||||||||||||||    
T  24479744 ttgcttcaagtgaagctataaaagatggtgttgcaatctaagaagatctttgttgcattagcttgcttagat 24479673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 31481392 - 31481317
Alignment:
Q  164 ctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaa 239  Q
    ||||||||||||||||||||||| || ||||||| |||| ||| || |||||||  ||  ||||||||||||||||    
T  31481392 ctcacattccttctaaatacttgtagttagaagaatttttttgcttaaagtgaagctaataaagatggtgttgcaa 31481317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 40017022 - 40016936
Alignment:
Q  63 aggtaagttatgctctatctttatatctcaatttttt--agtgaatgttggatttagttcattcatttatacctcaaatttactttt 147  Q
    |||||| || || |||||||||| |||||||||||||  ||| | | ||| |||| ||||| ||||||||||||| |||||||||||    
T  40017022 aggtaaattttgttctatctttacatctcaattttttttagttattattgaatttggttcaatcatttatacctctaatttactttt 40016936  T

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Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 6224119 - 6223888
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||| | |||||| || ||||| ||||||||||||||||||||||    
T  6224119 ctgttcaaaaagtagcaacacttaaatcaatatgattttgttgcttgcttcatctttagtaaaggtaaattctgctccatctttatatctcaatttttta 6224020  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||||||          | || ||||||||||||||||||||||||||||||||    
T  6224019 gtgattgttggatttggttcaatcatttatacctcaaatttacttttattttg--tttttgttcccatattccttctaaatacttgcagctagaagactt 6223922  T
Q  201 ttgttgtttcaagtgaaaatatgaaagatggtgt 234  Q
    |||||||||| || |||  |||||||||||||||    
T  6223921 ttgttgtttcgagagaagctatgaaagatggtgt 6223888  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 84 - 285
Target Start/End: Original strand, 17633856 - 17634056
Alignment:
Q  84 tatatctcaatttttt-agtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaata 182  Q
    |||||||||||||||| ||||| | |||||||| ||||| |||||||||||| ||||||||||||| ||||          |||||||||||||||||||    
T  17633856 tatatctcaatttttttagtgattattggatttggttcaatcatttatacctaaaatttacttttactttgtttttgtt--ctcacattccttctaaata 17633953  T
Q  183 cttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttca 282  Q
    ||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||||||||| ||||||| |||  |||||||||||||| || |||    
T  17633954 cttgcagctagaagatttttgttgcttcaagtgaagttatgaaagatggtgttgcaagccaagaagatttttgctgcggtagcttgcttagatcccctca 17634053  T
Q  283 tgg 285  Q
    |||    
T  17634054 tgg 17634056  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 347
Target Start/End: Complemental strand, 14998189 - 14998069
Alignment:
Q  228 atggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatggtta--tttattattttttggtggaaaaagtgattattgctag 325  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||   |||||||| ||  |||||| || |||  ||||||||||||||||| ||||    
T  14998189 atggtgttgcaaaccaagaagatttttgttgcattagcttgcttagaagacttcatggctaattttatt-ttattttttggaaaaagtgattattactag 14998091  T
Q  326 gtttggcgaggatatcttattt 347  Q
    |||| |  ||||||||||||||    
T  14998090 gtttagttaggatatcttattt 14998069  T

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Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 24631564 - 24631841
Alignment:
Q  4 ttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtg 103  Q
    |||||||||| ||||||||| ||||||||||||||||||  ||||||||||| ||| | |||||| || ||||| ||||||||||||||  |||||||||    
T  24631564 ttcagaaagttgcaacacttgaatcaataggattttgttccttgcttcatctttagtaaaggtaaattctgctccatctttatatctcagatttttagtg 24631663  T
Q  104 a--atgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttt 201  Q
    |   |||||||||| ||||| |||||||||||||||||||||||||| ||||          |||||||||||  |||||||||||||||||||||||||    
T  24631664 attgtgttggatttggttcaatcatttatacctcaaatttacttttaatttg----tttgtcctcacattcct--taaatacttgcagctagaagacttt 24631757  T
Q  202 tgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatgg 285  Q
    |||||  |||||||||  || |||| ||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||||    
T  24631758 tgttgcctcaagtgaagctacgaaacatggtgttgcaagtcaagaagatttttgttgcattagcttgcttagatcccctcatgg 24631841  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1943365 - 1943129
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||| ||||||||| |||||||||||||||||  |||||||| ||| ||      ||| | |||||| || ||||| |||||||||||||||||||||     
T  1943365 ctgtttagaaagtagtaacacttaaatcaatagacttttgttgcttgtttt-----tagaaaaggtaaattctgctccatctttatatctcaattttttt 1943271  T
Q  101 --gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagac 198  Q
      |||| | |  ||||| ||||| ||| |||||||||||||||||||||||||||          |||||||||||||||||||||||| |||||||||     
T  1943270 ttgtgattatcagatttggttcaatcacttatacctcaaatttacttttattttg--tttgtgttctcacattccttctaaatacttgcggctagaagat 1943173  T
Q  199 ttttgttgtttcaagtgaaaatatga---aagatggtgttgcaa 239  Q
     ||||||| | ||||||||| ||| |   |||||||||||||||    
T  1943172 atttgttgctccaagtgaaactattaattaagatggtgttgcaa 1943129  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 30129181 - 30129257
Alignment:
Q  164 ctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagc 241  Q
    |||||||||||||||||||||||||||||||||| |||||||  || | |||||  ||| ||||||||||||||||||    
T  30129181 ctcacattccttctaaatacttgcagctagaaga-ttttgttactttaggtgaagctattaaagatggtgttgcaagc 30129257  T

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Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 18308975 - 18308714
Alignment:
Q  12 gtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttgg 111  Q
    |||| |||||||  ||||||| ||||||| || ||||||||||||||| | |||||| || ||||| |||||||||||||||||| ||||||| ||||||    
T  18308975 gtagaaacacttttatcaatatgattttgctgcttgcttcatctctagtaaaggtaaattctgctccatctttatatctcaatttcttagtgattgttgg 18308876  T
Q  112 atttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttca 211  Q
    |||| ||||| | |||||||||||||||||| |||||||| |          ||||||||| |||||||||||||||||||||||||||||||||| ||     
T  18308875 atttggttcaataatttatacctcaaatttatttttatttagtttttgat--ctcacattcattctaaatacttgcagctagaagacttttgttgtatcc 18308778  T
Q  212 agtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagat 275  Q
    || |||  |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  18308777 agagaagctatgaaggatggtgttgcaagccaagaagatttctgttgcattagcttgcttagat 18308714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 39367448 - 39367720
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| | ||| || || ||||| ||| |||||||||| | ||| |    
T  39367448 ctgttcagaaagtagcaacacttaaatcaataggattttgttggctgcttcatctttagtaaaggaaaattctgctccatc-ttatatctcattatttca 39367546  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
    |||| |||||||||| || || | |||||||||||||||||||||||||||||          ||||||||||||||||||||||| |||||||||||||    
T  39367547 gtgattgttggatttggtacaattatttatacctcaaatttacttttattttg--tttttgttctcacattccttctaaatacttgtagctagaagactt 39367644  T
Q  201 ttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagc-ttgcttagat 275  Q
    |||||||||| |  |||  ||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  39367645 ttgttgtttccaaggaagctatgaaaaatggtgttgcaagccaagcagatttttgttgcattagctttgcttagat 39367720  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 17113554 - 17113447
Alignment:
Q  168 cattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagctt 267  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||| ||||  |||||| |||| ||||||||||||| || |||||||||||||||||||    
T  17113554 cattccttttaaatacttgcagctagaagatttttgttgattcaaatgaagctatgaatgatgttgttgcaagccaataagatttttgttgcattagctt 17113455  T
Q  268 gcttagat 275  Q
    ||||||||    
T  17113454 gcttagat 17113447  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 347
Target Start/End: Original strand, 39367757 - 39367807
Alignment:
Q  297 tttttggtggaaaaagtgattattgctaggtttggcgaggatatcttattt 347  Q
    ||||||||||||||||||||| || |||||||| |  ||||||||||||||    
T  39367757 tttttggtggaaaaagtgattgttactaggtttagttaggatatcttattt 39367807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 31571671 - 31571518
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||| | ||  ||||||||||||||||||||||    
T  31571671 ctgttcagaaagtggcaacacttaaatcaataggattttgttgtttgattcatctttagtaaaggtaagttcttctgcatctttatatctcaatttttta 31571572  T
Q  101 gtgaatgttggatttagttcattcatttata-cctcaaatttacttttattttg 153  Q
    |||| |||||||||||||||| ||||||||| || |||||||||||||||||||    
T  31571571 gtgattgttggatttagttcaatcatttatacccccaaatttacttttattttg 31571518  T

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Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 25338455 - 25338663
Alignment:
Q  1 ctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatttttta 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||| || | ||| ||||||||||||||| |||||     
T  25338455 ctgtttagaaagtagcaacacttaaatcaataggattttgttgcttgcttcatctttagtaaaggtaaattctactccatctttatatctcaaatttttt 25338554  T
Q  101 gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagactt 200  Q
    |||| | |||||||| ||||| ||||||||||||  |||||||||||| ||||          |||||||| ||| ||||||||||||||||||||| ||    
T  25338555 gtgattattggatttggttcaatcatttatacctacaatttacttttactttg--tttttgttctcacatttcttttaaatacttgcagctagaagattt 25338652  T
Q  201 ttgttgtttca 211  Q
    |||||| ||||    
T  25338653 ttgttgcttca 25338663  T

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Target: scaffold0002 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 445602 - 445801
Alignment:
Q  15 gcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttggatt 114  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||| | | |||| || ||||| || ||||||| |||||||||| || ||| |||||||    
T  445602 gcaacacttaaatcaataagattttgttgtttgctttatctttagtaaaagtaaattttgctccat-tttatatttcaattttttggtaaatattggatt 445700  T
Q  115 tagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagt 214  Q
    | |||||   |||||||||||||||||||||||||||||          || ||||||||||||||||||||||||||||||| | |||||| |||||||    
T  445701 tggttcaaatatttatacctcaaatttacttttattttg--tttttgtgcttacattccttctaaatacttgcagctagaagattgttgttgcttcaagt 445798  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 445854 - 445906
Alignment:
Q  249 atttttgttgcattagcttgcttagattccttcatggttatttattatttttt 301  Q
    |||||| |||||||||||||||||||| || |||||| ||||| || ||||||    
T  445854 attttttttgcattagcttgcttagatcccatcatggctatttcttttttttt 445906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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