View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_53 (Length: 347)

Name: NF7607_low_53
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_53
NF7607_low_53
[»] chr8 (12 HSPs)
chr8 (17-110)||(39549882-39549975)
chr8 (262-330)||(9312321-9312389)
chr8 (262-330)||(16726952-16727020)
chr8 (262-330)||(35217804-35217872)
chr8 (262-330)||(23715998-23716066)
chr8 (262-330)||(32740977-32741045)
chr8 (262-330)||(38224552-38224620)
chr8 (262-330)||(42990343-42990411)
chr8 (262-330)||(44501251-44501319)
chr8 (262-330)||(12773573-12773641)
chr8 (141-175)||(39549617-39549651)
chr8 (109-143)||(39549834-39549868)
[»] chr7 (9 HSPs)
chr7 (262-330)||(336917-336985)
chr7 (262-330)||(10267967-10268035)
chr7 (262-330)||(43311171-43311239)
chr7 (272-330)||(3524060-3524118)
chr7 (262-330)||(10902386-10902454)
chr7 (262-330)||(25519847-25519915)
chr7 (277-330)||(32592482-32592535)
chr7 (262-330)||(11806347-11806415)
chr7 (265-330)||(4122296-4122361)
[»] chr6 (4 HSPs)
chr6 (262-330)||(30702865-30702933)
chr6 (262-330)||(14220361-14220429)
chr6 (262-330)||(5309101-5309169)
chr6 (262-299)||(21351136-21351173)
[»] chr5 (8 HSPs)
chr5 (262-330)||(37037534-37037602)
chr5 (262-330)||(37827332-37827400)
chr5 (262-330)||(43489461-43489529)
chr5 (262-330)||(2027837-2027905)
chr5 (262-330)||(23417053-23417121)
chr5 (262-330)||(3616677-3616745)
chr5 (262-330)||(33336300-33336368)
chr5 (262-330)||(18003430-18003498)
[»] chr4 (12 HSPs)
chr4 (262-330)||(5927236-5927304)
chr4 (262-330)||(15056336-15056404)
chr4 (262-330)||(21398627-21398695)
chr4 (262-330)||(45108290-45108358)
chr4 (262-330)||(10489755-10489823)
chr4 (270-330)||(14678468-14678528)
chr4 (262-330)||(27181814-27181882)
chr4 (262-330)||(45117997-45118065)
chr4 (262-324)||(17194695-17194757)
chr4 (262-330)||(1084352-1084420)
chr4 (262-330)||(49545431-49545499)
chr4 (272-330)||(54072629-54072687)
[»] chr3 (8 HSPs)
chr3 (262-330)||(3863804-3863872)
chr3 (262-330)||(20395080-20395148)
chr3 (262-330)||(38516922-38516990)
chr3 (262-330)||(44552060-44552128)
chr3 (262-330)||(27644298-27644366)
chr3 (265-330)||(34946916-34946981)
chr3 (270-330)||(49529853-49529912)
chr3 (265-330)||(28392648-28392713)
[»] chr2 (8 HSPs)
chr2 (262-330)||(7355273-7355341)
chr2 (262-330)||(3536288-3536356)
chr2 (262-330)||(30111949-30112017)
chr2 (262-330)||(30123236-30123304)
chr2 (262-330)||(30877287-30877355)
chr2 (262-330)||(12534349-12534417)
chr2 (262-330)||(2273973-2274041)
chr2 (262-330)||(43379926-43379994)
[»] chr1 (6 HSPs)
chr1 (262-330)||(7391206-7391274)
chr1 (262-330)||(8363804-8363872)
chr1 (270-330)||(16640592-16640652)
chr1 (262-330)||(41775301-41775369)
chr1 (262-330)||(22146474-22146542)
chr1 (270-330)||(29650928-29650988)
[»] scaffold0129 (1 HSPs)
scaffold0129 (262-330)||(37829-37897)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 39549975 - 39549882
Alignment:
Q  17 agtaacttgattggtatggttgttttgcttccacgctttctgccacttcccgactcaactgttgctatccaaatgttttttcttgcctcgtgtt 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39549975 agtaacttgattggtatggttgttctgcttccacgctttctgccacttcccgactcaacagttgctatccaaatgttttttcttgcctcgtgtt 39549882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 9312321 - 9312389
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9312321 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 9312389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 16726952 - 16727020
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16726952 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 16727020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 35217872 - 35217804
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35217872 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 35217804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 23715998 - 23716066
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23715998 ttgtccggtcccgacttgagccagtgtaaaaaattgaataattcgataaaataataagataataatttt 23716066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 32740977 - 32741045
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32740977 ttgtccggtcccgacttgagccagtgtaaaaaattgaataattcgataaaataataagataataatttt 32741045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 38224620 - 38224552
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38224620 ttgtccggtcccgacttaggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 38224552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 42990411 - 42990343
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  42990411 ttgtccggtcccgacttgggctagtgtaaaaaattgaataattcgataaaataataagataataatttt 42990343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 44501251 - 44501319
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44501251 ttgtccggtcccgatttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 44501319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 12773641 - 12773573
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| | |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12773641 ttgtccggttccgatttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 12773573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 39549651 - 39549617
Alignment:
Q  141 atattgtgtaaaaataatgaaacgatagagaaagc 175  Q
    |||||||||||||||||||||||||||||||||||    
T  39549651 atattgtgtaaaaataatgaaacgatagagaaagc 39549617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 39549868 - 39549834
Alignment:
Q  109 ttgttatagttataataatagtatcatcatgaata 143  Q
    ||||||||||||||||||||||| |||||||||||    
T  39549868 ttgttatagttataataatagtaccatcatgaata 39549834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 336985 - 336917
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  336985 ttgtccgatcccgacttgggctagtgtaaaaaattgaataattcgataaaataataagataataatttt 336917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 10267967 - 10268035
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10267967 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 10268035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 43311171 - 43311239
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43311171 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 43311239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 3524118 - 3524060
Alignment:
Q  272 ccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3524118 ccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 3524060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 10902454 - 10902386
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10902454 ttgtccggttccgacttgggtcagtgtaaaaaattgaataattcgataaaataataagataataatttt 10902386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 25519915 - 25519847
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    
T  25519915 ttgtccggtcccgacttggaccagtgtaaaaaattgaataatttgataaaataataagataataatttt 25519847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 32592535 - 32592482
Alignment:
Q  277 ttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32592535 ttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 32592482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 11806415 - 11806347
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||    
T  11806415 ttgtccggtcccgacttgggccaatgtaagaaattgaaaaactcgataaaataataagataataatttt 11806347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 4122361 - 4122296
Alignment:
Q  265 tccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    |||| ||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||    
T  4122361 tccggtcccgacttgggccaatgtaagaaattgaaaaactcgataaaataataagataataatttt 4122296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 30702865 - 30702933
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30702865 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 30702933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 14220429 - 14220361
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14220429 ttgtccggtcccgtcttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 14220361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 5309101 - 5309169
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| | |||| || ||||| ||||| |||||||| || |||||||||||||||||||||||||||    
T  5309101 ttgtccggttccgatttaggccaatgtaagaaattgaaaaactcgataaaataataagataataatttt 5309169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 21351136 - 21351173
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaa 299  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  21351136 ttgtctgatcccgacttgggccaatgtaaaaaattgaa 21351173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 37037534 - 37037602
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37037534 ttgttcgatcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 37037602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 37827332 - 37827400
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37827332 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 37827400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 43489529 - 43489461
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43489529 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 43489461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 2027905 - 2027837
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2027905 ttgtccggtcccgacttgagccagtgtaaaaaattgaataattcgataaaataataagataataatttt 2027837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 23417121 - 23417053
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  23417121 ttgtccggtcccgacttgggccagtgtaaaaaattgaataatttgataaaataataagataataatttt 23417053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 3616745 - 3616677
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3616745 ttgtccggttccgacttgggtcagtgtaaaaaattgaataattcgataaaataataagataataatttt 3616677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 33336368 - 33336300
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||||||    
T  33336368 ttgtccggtcccgacttggaccaatgtaaaaaattgaaaaactcgataaaataataagataataatttt 33336300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 18003430 - 18003498
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| | |||| ||| |||| |||||||||||||| || |||||||||||||||||||||||||||    
T  18003430 ttgtccggttccgatttgagccaatgtaaaaaattgaaaaactcgataaaataataagataataatttt 18003498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 5927304 - 5927236
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5927304 ttgttcgatcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 5927236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 15056404 - 15056336
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15056404 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 15056336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 21398695 - 21398627
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21398695 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 21398627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 45108358 - 45108290
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45108358 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 45108290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 10489823 - 10489755
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  10489823 ttgtccggtcccgacttgggccagtgtaaaaaattaaataattcgataaaataataagataataatttt 10489755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 14678528 - 14678468
Alignment:
Q  270 tcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14678528 tcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 14678468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 27181814 - 27181882
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27181814 ttgtccggtcccgacttgagccagtgtaaaaaattgaataattcgataaaataataagataataatttt 27181882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 45118065 - 45117997
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45118065 ttgtccggtcccgacttaggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 45117997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 17194695 - 17194757
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataat 324  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17194695 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataat 17194757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 1084352 - 1084420
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  1084352 ttgtccggttccgacttgggccagtgtaaaaaattgaataattcgataaaatagtaagataataatttt 1084420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 49545431 - 49545499
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49545431 ttgtccggtcctgatttgggtcagtgtaaaaaattgaataattcgataaaataataagataataatttt 49545499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 54072687 - 54072629
Alignment:
Q  272 ccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||    
T  54072687 ccgacttaggccaatgtaaaaaattgaaaaactcgataaaataataagataataatttt 54072629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 3863872 - 3863804
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3863872 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 3863804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 20395148 - 20395080
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20395148 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 20395080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 38516922 - 38516990
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38516922 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 38516990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 44552060 - 44552128
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44552060 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 44552128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 27644298 - 27644366
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27644298 ttgtccggtcccgacttggaccagtgtaaaaaattgaataattcgataaaataataagataataatttt 27644366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 34946981 - 34946916
Alignment:
Q  265 tccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  34946981 tccgatcccaacttgggccagtgtaaaaaattggataattcgataaaataataagataataatttt 34946916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 49529912 - 49529853
Alignment:
Q  270 tcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||    
T  49529912 tcccgacttgggccaatgtaaaaaattgaa-aactcgataaaataataagataataatttt 49529853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 28392648 - 28392713
Alignment:
Q  265 tccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    |||| |||||||||  |||| |||||||||||||| ||||| || |||||||||||||||||||||    
T  28392648 tccggtcccgacttaagccaatgtaaaaaattgaaaaattcaatgaaataataagataataatttt 28392713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 7355273 - 7355341
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7355273 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 7355341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 3536356 - 3536288
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  3536356 ttgtccggtcccgacttgggccagtgtaaaaaattaaataattcgataaaataataagataataatttt 3536288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 30111949 - 30112017
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  30111949 ttgtccggtcccgacttgggccagtgtaaaaaattgaataactcgataaaataataagataataatttt 30112017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 30123236 - 30123304
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  30123236 ttgtccggtcccgacttgggccagtgtaaaaaattgaataactcgataaaataataagataataatttt 30123304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 30877287 - 30877355
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30877287 ttgtccggtcccaacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 30877355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 12534417 - 12534349
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12534417 ttgtccggtctcaacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 12534349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 2274041 - 2273973
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| | |||||||| | ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  2274041 ttgtccggttccgacttgagtcagtgtaaaaaattgagtaattcgataaaataataagataataatttt 2273973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 43379926 - 43379994
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||||||||||||||||||| | ||| |||||||| || | |||||||||||||||||||||||||    
T  43379926 ttgtccgatcccgacttgggccaatttaagaaattgaaaaacttgataaaataataagataataatttt 43379994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 7391274 - 7391206
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7391274 ttgtccggtcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 7391206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 8363872 - 8363804
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8363872 ttgtccggtcccgacttgagccagtgtaaaaaattgaataattcgataaaataataagataataatttt 8363804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 16640592 - 16640652
Alignment:
Q  270 tcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16640592 tcccgacttgggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 16640652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 41775369 - 41775301
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  41775369 ttgtccggtcccgacttgggctagtgtaaaaaattgaataattcgataaaataataagataataatttt 41775301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 22146474 - 22146542
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22146474 ttgtccggttccgacttaggccagtgtaaaaaattgaataattcgataaaataataagataataatttt 22146542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 29650988 - 29650928
Alignment:
Q  270 tcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  29650988 tcccgactttggctagtgtaaaaaattgaataattcgataaaataataagataataatttt 29650928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 37829 - 37897
Alignment:
Q  262 ttgtccgatcccgacttgggccagtgtaaaaaattgaacaattcgataaaataataagataataatttt 330  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  37829 ttgtccggtcccgacttgggccagtgtaaaaagttgaataattcgataaaataataagataataatttt 37897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University