View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_54 (Length: 346)
Name: NF7607_low_54
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 50054377 - 50054691
Alignment:
| Q |
16 |
atgttgcacaaaactgtttatatatacaaagtggtgggaaactaaagtaaaacgaaatgcaaactcataaagtaacaaattattactttttgcacatact |
115 |
Q |
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| T |
50054377 |
atgttgcacaaaactgtttatctatacaaagtggtgggaaactaaagtaaaacgaaatgcaaactcataaagcaacaaattattacttttagcacatact |
50054476 |
T |
|
| Q |
116 |
acaaaaagattaggggtaaagtaacccaacaaatgctaactcttatttattttagcaaaggaaatgttggaactgcaaaggaagccctcttcacaaatct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50054477 |
acaaaaagattaggggtaaagtaacccaacaaatgctaactcttatttattttagcaaaggaaatgttggaactgcaaaggaagccctcttcacaaatct |
50054576 |
T |
|
| Q |
216 |
ccctttcattcttggtctcttctctgcattcaatttcctaacctcgtaccttattttctttgagaacaaccttgttcttcgcttttctctgtacctcgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50054577 |
ccctttcattcttggtctcttctctgcattcaatttcctaacctcgtaccttattttctttgagaacaaccttgttcttcgcttttctctgtacctcgaa |
50054676 |
T |
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| Q |
316 |
acccttgcttctctg |
330 |
Q |
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| T |
50054677 |
acccttgcttctctg |
50054691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 329
Target Start/End: Complemental strand, 43869198 - 43869086
Alignment:
| Q |
217 |
cctttcattcttggtctcttctctgcattcaatttcctaacctcgtaccttattttctttgagaacaaccttgttcttcgcttttctctgtacctcgaaa |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||| || || || ||||| ||||||| ||||| | |||||||| || ||||||||||| || | |
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| T |
43869198 |
cctttcattcttggtctcttttctgcattcaatttccttacttcatatcttatcttctttgcaaacaaacgtgttcttcttttctctctgtaccttgata |
43869099 |
T |
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| Q |
317 |
cccttgcttctct |
329 |
Q |
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| T |
43869098 |
ctcttgcttctct |
43869086 |
T |
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