View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_56 (Length: 337)
Name: NF7607_low_56
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_56 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 43627111 - 43626790
Alignment:
| Q |
16 |
atgagaggtgacttgcctcctaattcaagtgaaacatgttttaaattactcttagctgcagcttgcattatttcacggcctacttcaactgaaccagtaa |
115 |
Q |
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| T |
43627111 |
atgagaggtgacttgcctcctaattcaagtgaaacatgttttaaattactcttagctgcagcttgcattatttcacggcctacttcaactgaaccagtaa |
43627012 |
T |
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| Q |
116 |
agctgacctgaagatacaaaaatcaaagggaatttaaagtgtaattttaaggtgtttgagagcaattttagaagcctagttagcatttcctttttcgtat |
215 |
Q |
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| T |
43627011 |
agctgacctgaagatacaaaaatcaaagggaatttaaagtgtaattttaaggtgtttgagagcaattttagaagcctagttagcatttcctttttcgtat |
43626912 |
T |
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| Q |
216 |
aattaacttacaacatctatgtccatgtgtgagctgattgcagcaccagcagttggaccaaatccgggtactacattcagcactccatttgggattccag |
315 |
Q |
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| T |
43626911 |
agttaacttacaacatctatgtccatgtgtgagctgattgcagcaccagcagttggaccaaatccgggtactacattcagcactccatttgggatcccag |
43626812 |
T |
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| Q |
316 |
cctttagaacacagacaaaaat |
337 |
Q |
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| T |
43626811 |
cctttagaacacaaacaaaaat |
43626790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 43620483 - 43620407
Alignment:
| Q |
16 |
atgagaggtgacttgcctcctaattcaagtgaaacatgttttaaattactcttagctgcagcttgcattatttcacg |
92 |
Q |
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| T |
43620483 |
atgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacg |
43620407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 318
Target Start/End: Complemental strand, 43619581 - 43619492
Alignment:
| Q |
229 |
catctatgtccatgtgtgagctgattgcagcaccagcagttggaccaaatccgggtactacattcagcactccatttgggattccagcct |
318 |
Q |
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| T |
43619581 |
catcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct |
43619492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 32407661 - 32407746
Alignment:
| Q |
234 |
atgtccatgtgtgagctgattgcagcaccagcagttggaccaaatccgggtactacattcagcactccatttgggattccagcctt |
319 |
Q |
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| T |
32407661 |
atgtccatgtgtgagcttattgcagctcctgcagttgcaccaaatccaggtactacattgagcactccatctggaattccagcctt |
32407746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 32407461 - 32407540
Alignment:
| Q |
22 |
ggtgacttgcctcctaattcaagtgaaacatgttttaaattactcttagctgcagcttgcattatttcacggcctacttc |
101 |
Q |
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| T |
32407461 |
ggtgattttcctcctaattcaagtgaaactggtttcaaattacttctagctgcagataccattatttcgcgtcctacttc |
32407540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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