View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_57 (Length: 332)
Name: NF7607_low_57
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 3 - 314
Target Start/End: Original strand, 40846751 - 40847063
Alignment:
| Q |
3 |
tgcagcagtaagttacaatccaatattggttgctcagttctaaggtactatcgaaggaaaaggacttcaagaaactatttacatgtttgacagctataac |
102 |
Q |
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| T |
40846751 |
tgcagtagtaagttacaagccaatattggttgctcagttctaaggtactatcgaaggaaaaggacttcaagaaactatttacatgtttgacagctataac |
40846850 |
T |
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| Q |
103 |
taattcatttgaaacacaaacaaaagagttaagcttaacaaatgtattgaacaaaaacatggtatggagtatatgcttcattttcaaaaataaaatatac |
202 |
Q |
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| T |
40846851 |
taattcatttgaaacacaaacaaaagagttaagcttaacaaatgtattgaacaaaaacatggtatggagtatatgcttcattttcaaaaataaaatatac |
40846950 |
T |
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| Q |
203 |
ttcaattaagttcaagcagtgatttttcacttttaaaatcatctat-aaagtttctcaaacatgagacaattacttgataaaacgatggacatttaacaa |
301 |
Q |
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| T |
40846951 |
ttcaattaagttcaagcagtgatttttcacttttaaaatcatctataaaagtttctcaaacatgagacaattacttgataaaacgatggaaatttaacaa |
40847050 |
T |
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| Q |
302 |
aatatgtcttggg |
314 |
Q |
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| T |
40847051 |
aatatgtcttggg |
40847063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 157 - 306
Target Start/End: Original strand, 40842733 - 40842878
Alignment:
| Q |
157 |
aaacatggtatggagtatatgcttcattttcaaaaataaaatatacttcaattaagttcaagcagtgatttttcacttttaaaatcatctataaagtttc |
256 |
Q |
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| T |
40842733 |
aaacatggtacgaagtatatgcttcgttttcaagaataaaatatatat-aattaagttcaagcagtgatttttcacttttataatcatc--taaagtttc |
40842829 |
T |
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| Q |
257 |
tcaaacatgagacaattacttgataaaacgatggacatttaacaaaatat |
306 |
Q |
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| T |
40842830 |
tcaaacatgagacaattacttgat-aaacgatggacatttaacaaaatat |
40842878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 45401352 - 45401278
Alignment:
| Q |
74 |
aaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgta |
148 |
Q |
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|||||||||| |||||||||| | ||||||||||||| ||||||||| ||| || |||||||||||| ||||||| |
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| T |
45401352 |
aaactatttatatgtttgacaacaataactaattcatatgaaacacacacagaaaagttaagcttaaaaaatgta |
45401278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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