View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_60 (Length: 314)
Name: NF7607_low_60
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 28 - 300
Target Start/End: Complemental strand, 43439614 - 43439339
Alignment:
| Q |
28 |
tgtcacactcaagttatgaatcaggaaagcagcctaagatatgattagcttgattttgatgagattgtagctcatgttgactatgaggtatcatcaatgg |
127 |
Q |
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| T |
43439614 |
tgtcacactcaagttatgaatcaggaaagcaacctaagatatgattagcttgattttgatgagattgtagctcatgttgactatgaggtatcatcaatgg |
43439515 |
T |
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| Q |
128 |
catgctattttgatttgaaaagtaattagctgtatctgtaaattgat---ttgaagtgaacaaattgtccaagcttttccaatcaattacttgtccattg |
224 |
Q |
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| T |
43439514 |
catgctattttgatttgaaaagtaattagctgtatctgtaaattgatttgttgaagtgaacaaattgtccaagcttttccaatcaattacttgtccattg |
43439415 |
T |
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| Q |
225 |
ttattattaatattattgctcctttcttcactgcaatattcttcaattgtgagtccattgtgatgagtatattctt |
300 |
Q |
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| T |
43439414 |
ttattattaatattattgctcctttcttcactgcaatattcttcaattgtgagtccattgtgatgagtattttctt |
43439339 |
T |
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