View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_65 (Length: 300)

Name: NF7607_low_65
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_65
NF7607_low_65
[»] chr1 (10 HSPs)
chr1 (13-282)||(916305-916574)
chr1 (13-272)||(924356-924615)
chr1 (13-280)||(909823-910090)
chr1 (118-274)||(936684-936840)
chr1 (87-276)||(419516-419705)
chr1 (87-276)||(975456-975645)
chr1 (124-259)||(949599-949734)
chr1 (118-259)||(942604-942745)
chr1 (118-259)||(960565-960706)
chr1 (118-259)||(971874-972015)
[»] scaffold0312 (1 HSPs)
scaffold0312 (87-276)||(10866-11055)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 916305 - 916574
Alignment:
Q  13 aatatataatagcaaaaggagttaagaagttgagtgagaacaaaattgttgtgtgccatctactgagttatccatatgcagtgttttattgtcacaaatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  916305 aatatataatagcaaaaggagttaagaagttgagtgagaacaaaattgttgtgtgccatctactgagttatccatatgcagtgttttattgtcacaaatt 916404  T
Q  113 acgggcaactaaagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgccacaatgatacttcacaatggagtccc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  916405 acgggcaactaaagtttactatttgcctatggaaggtattgatggtaccaaagttaaaactgctgctatttgccacaatgatacttcacaatggagtccc 916504  T
Q  213 aagcatttggcttttcaagtactcaaggttcaacctggaactgttccagtttgccacttcctacaacatg 282  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  916505 aagcatttggcttttcatgtactcaaggttcaacctggaactgttccagtttgccacttcctacaacatg 916574  T

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Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 924356 - 924615
Alignment:
Q  13 aatatataatagcaaaaggagttaagaagttgagtgagaacaaaattgttgtgtgccatctactgagttatccatatgcagtgttttattgtcacaaatt 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||  |||||||||| |||||||||||||||||||| |    
T  924356 aatatataatagcaaaaggagttaagaagttgggtgagaacaaaattgttgtgtgccatccaatggattatccatatacagtgttttattgtcacaaact 924455  T
Q  113 acgggcaactaaagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgccacaatgatacttcacaatggagtccc 212  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||  |||||||||||||||||||||     
T  924456 acgtgcaactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgccactctgatacttcacaatggagtcct 924555  T
Q  213 aagcatttggcttttcaagtactcaaggttcaacctggaactgttccagtttgccacttc 272  Q
    || |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  924556 aaacatttggcttttcaagtactcaaaattcaacctggaactgttccagtttgccacttc 924615  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 909823 - 910090
Alignment:
Q  13 aatatataatagcaaaaggagttaagaagttgagtgagaacaaaattgttgtgtgccatctactgagttatccatatgcagtgttttattgtcacaaatt 112  Q
    ||||| |||||||||| ||||| |||||  || | ||||||||  | |||||||||||   || || ||| || |||||||| ||||| |||||||||      
T  909823 aatatgtaatagcaaacggagtgaagaaaatgggagagaacaatttggttgtgtgccacaaacggaattacccttatgcagttttttactgtcacaaaac 909922  T
Q  113 acgggcaactaaagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgccacaatgatacttcacaatggagtccc 212  Q
    |   |||||||||||||||| | ||||| ||||||||  ||||||||  | ||||||| ||| |||||||||||||  |||||||||||||||||| |      
T  909923 agatgcaactaaagtttactctgtgcctttggaaggtgctgatggaagtagagttaaagctgttgctatttgccactctgatacttcacaatggagcctt 910022  T
Q  213 aagcatttggcttttcaagtactcaaggttcaacctggaactgttccagtttgccacttcctacaaca 280  Q
    || ||||||||||||||||| ||||| |||||||  |||||| |||||||||||||| ||||||||||    
T  910023 aaacatttggcttttcaagtgctcaaagttcaacaaggaacttttccagtttgccacatcctacaaca 910090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 118 - 274
Target Start/End: Original strand, 936684 - 936840
Alignment:
Q  118 caactaaagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgccacaatgatacttcacaatggagtcccaagca 217  Q
    ||||||||||||||| | ||||| |||||||| |||||||||  | ||||||| ||| |||| | || |||| ||||||||||||||||| ||| || ||    
T  936684 caactaaagtttactctgtgcctttggaaggtgttgatggaagtagagttaaagctgttgctgtgtgtcacactgatacttcacaatggaatcctaaaca 936783  T
Q  218 tttggcttttcaagtactcaaggttcaacctggaactgttccagtttgccacttcct 274  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  936784 tttggcttttcaagtgctcaatgttcaacctggaactgttccagtttgtcacttcct 936840  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 276
Target Start/End: Complemental strand, 419705 - 419516
Alignment:
Q  87 tatgcagtgttttattgtcacaaattacgggcaactaaagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgcc 186  Q
    |||||||||||||| |||||||||  |    ||||||||| ||||| | ||||| |||| |||  |||||||| || ||||||| ||  |||| | || |    
T  419705 tatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtc 419606  T
Q  187 acaatgatacttcacaatggagtcccaagcatttggcttttcaagtactcaaggttcaacctggaactgttccagtttgccacttcctac 276  Q
    ||| |||||| ||| ||||||  || || |||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| ||||||    
T  419605 acactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttcaacctgggactgttccagtttgtcacctcctac 419516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 276
Target Start/End: Original strand, 975456 - 975645
Alignment:
Q  87 tatgcagtgttttattgtcacaaattacgggcaactaaagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgcc 186  Q
    |||||||||||||| |||||||||  |    ||||||||| ||||| | ||||| |||| |||  |||||||| || ||||||| ||  |||| | || |    
T  975456 tatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtc 975555  T
Q  187 acaatgatacttcacaatggagtcccaagcatttggcttttcaagtactcaaggttcaacctggaactgttccagtttgccacttcctac 276  Q
    ||| |||||| ||| ||||||  || || |||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| ||||||    
T  975556 acactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttcaacctgggactgttccagtttgtcacctcctac 975645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 949599 - 949734
Alignment:
Q  124 aagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgccacaatgatacttcacaatggagtcccaagcatttggc 223  Q
    ||||||||| | ||||  |||||||| ||||||||| ||  |||||||||  || | |||| |||| |||||| ||| ||||||  || || ||||||||    
T  949599 aagtttactctgtgcccttggaaggtgttgatggaaacatggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggc 949698  T
Q  224 ttttcaagtactcaaggttcaacctggaactgttcc 259  Q
    ||||||||| ||||| |||||||| || ||||||||    
T  949699 ttttcaagtgctcaaagttcaaccagggactgttcc 949734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 942604 - 942745
Alignment:
Q  118 caactaaagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgccacaatgatacttcacaatggagtcccaagca 217  Q
    ||||| ||||||||| | ||||  |||||||| ||||||||| ||  |||||||||  |||| |||| |||| |||||| ||| |||||| ||| || ||    
T  942604 caactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaaca 942703  T
Q  218 tttggcttttcaagtactcaaggttcaacctggaactgttcc 259  Q
    |||||||||| | || || || |||||||| || ||||||||    
T  942704 tttggctttttatgtgcttaaagttcaaccagggactgttcc 942745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 960565 - 960706
Alignment:
Q  118 caactaaagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgccacaatgatacttcacaatggagtcccaagca 217  Q
    ||||| ||||||||| | ||||  |||||||| ||||||||| ||  |||||||||  |||| |||| |||| |||||| ||| |||||| ||| || ||    
T  960565 caactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaaca 960664  T
Q  218 tttggcttttcaagtactcaaggttcaacctggaactgttcc 259  Q
    |||||||||| | || || || |||||||| || ||||||||    
T  960665 tttggctttttatgtgcttaaagttcaaccagggactgttcc 960706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 971874 - 972015
Alignment:
Q  118 caactaaagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgccacaatgatacttcacaatggagtcccaagca 217  Q
    ||||| ||||||||| | ||||  |||||||| ||||||||| ||  |||||||||  |||| |||| |||| |||||| ||| |||||| ||| || ||    
T  971874 caactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaaca 971973  T
Q  218 tttggcttttcaagtactcaaggttcaacctggaactgttcc 259  Q
    |||||||||| | || || || |||||||| || ||||||||    
T  971974 tttggctttttatgtgcttaaagttcaaccagggactgttcc 972015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 276
Target Start/End: Original strand, 10866 - 11055
Alignment:
Q  87 tatgcagtgttttattgtcacaaattacgggcaactaaagtttactatttgcctatggaaggtattgatggaaccaaagttaaaactgctgctatttgcc 186  Q
    |||||||||||||| |||||||||  |    ||||||||| ||||| | ||||| |||| |||  |||||||| || ||||||| ||  |||| | || |    
T  10866 tatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtc 10965  T
Q  187 acaatgatacttcacaatggagtcccaagcatttggcttttcaagtactcaaggttcaacctggaactgttccagtttgccacttcctac 276  Q
    ||| |||||| ||| ||||||  || || |||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| ||||||    
T  10966 acactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttcaacctgggactgttccagtttgtcacctcctac 11055  T

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