View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_68 (Length: 297)

Name: NF7607_low_68
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_68
NF7607_low_68
[»] chr3 (4 HSPs)
chr3 (8-199)||(20365090-20365281)
chr3 (234-282)||(20365376-20365424)
chr3 (205-246)||(20365333-20365374)
chr3 (235-282)||(22809138-22809185)
[»] chr5 (4 HSPs)
chr5 (233-278)||(17657340-17657385)
chr5 (234-278)||(39154705-39154749)
chr5 (234-278)||(2577372-2577416)
chr5 (234-278)||(24030312-24030356)
[»] chr4 (5 HSPs)
chr4 (234-277)||(43699393-43699436)
chr4 (234-278)||(12495588-12495632)
chr4 (234-278)||(17222927-17222971)
chr4 (234-278)||(36741002-36741046)
chr4 (234-278)||(48667768-48667812)
[»] chr2 (3 HSPs)
chr2 (235-278)||(4090587-4090630)
chr2 (237-276)||(29133614-29133653)
chr2 (238-278)||(7480847-7480887)
[»] chr8 (2 HSPs)
chr8 (234-279)||(24350463-24350508)
chr8 (234-279)||(28879152-28879197)
[»] chr1 (2 HSPs)
chr1 (234-279)||(37712164-37712209)
chr1 (234-278)||(48819397-48819441)
[»] scaffold0157 (1 HSPs)
scaffold0157 (234-278)||(24845-24889)
[»] chr6 (2 HSPs)
chr6 (234-278)||(3210933-3210977)
chr6 (234-278)||(35071372-35071416)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 20365090 - 20365281
Alignment:
Q  8 acatcatcatcaaaaagaagttgagatcctcttcatttcccaaaagaaatggagaacactattgatcagagagatacacataagtctgatataagtaaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20365090 acatcatcatcaaaaagaagttgagatcctcttcatttcccaaaagaaatggagaacactattgatcagagagatacacataagtctgatataagtaaga 20365189  T
Q  108 cccaccttttcaaaaattcaaaaatatgggtcctaccaataaaaatttaatttttaagctcgtctactatttcaattatcaactaaatgttc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20365190 cccaccttttcaaaaattcaaaaatatgggtcctaccaataaaaatttaatttttaagctcgtctactatttcaattatcaactaaatgttc 20365281  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 20365376 - 20365424
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttcttctt 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20365376 tagcttatgcaaataaataactttttgtgtcaattcataagttcttctt 20365424  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 20365333 - 20365374
Alignment:
Q  205 ggatattgcaataaagggtccatttggattagcttatgcaaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20365333 ggatattgcaataaagggtccatttggattagcttatgcaaa 20365374  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 22809138 - 22809185
Alignment:
Q  235 agcttatgcaaataaataactttttgtgtcaattcataagttcttctt 282  Q
    ||||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  22809138 agcttgtgcaaataaataagtttttatgttaattcataagttcttctt 22809185  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 17657385 - 17657340
Alignment:
Q  233 ttagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||    
T  17657385 ttagcttatgcaaataaataaccttttatgttaattcataagttct 17657340  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 39154705 - 39154749
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    ||||||||||||||||||||  |||||||| ||||||||||||||    
T  39154705 tagcttatgcaaataaataagcttttgtgttaattcataagttct 39154749  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 2577372 - 2577416
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    |||||||||||||||||||| || || ||| ||||||||||||||    
T  2577372 tagcttatgcaaataaataaattgttatgttaattcataagttct 2577416  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 24030356 - 24030312
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    ||||||||||||||||||||  |||| ||| ||||||||||||||    
T  24030356 tagcttatgcaaataaataagcttttatgttaattcataagttct 24030312  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 43699393 - 43699436
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttc 277  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||    
T  43699393 tagcttatgcaaataaataagtttttatgttaattcataagttc 43699436  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 12495588 - 12495632
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    |||||||||||||||||||| ||||| ||| |||| |||||||||    
T  12495588 tagcttatgcaaataaataagtttttatgttaatttataagttct 12495632  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 17222971 - 17222927
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    |||||||| ||||||||||| ||||| ||| ||||||||||||||    
T  17222971 tagcttattcaaataaataagtttttatgttaattcataagttct 17222927  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 36741046 - 36741002
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    ||||||||||||||||||||  ||||||||  |||||||||||||    
T  36741046 tagcttatgcaaataaataagcttttgtgttgattcataagttct 36741002  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 48667812 - 48667768
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    ||||||||||||||||||||  |||| ||| ||||||||||||||    
T  48667812 tagcttatgcaaataaataagcttttatgttaattcataagttct 48667768  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 4090630 - 4090587
Alignment:
Q  235 agcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    ||||||||||||||||||| || |||||| ||||||||||||||    
T  4090630 agcttatgcaaataaataagttgttgtgttaattcataagttct 4090587  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 29133614 - 29133653
Alignment:
Q  237 cttatgcaaataaataactttttgtgtcaattcataagtt 276  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  29133614 cttatgcaaataaataaatttttgtgtcaatttataagtt 29133653  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 7480847 - 7480887
Alignment:
Q  238 ttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    |||||||||||||||| ||||| ||| ||||||||||||||    
T  7480847 ttatgcaaataaataagtttttatgttaattcataagttct 7480887  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 24350463 - 24350508
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttctt 279  Q
    ||||||||||||||||||||  |||| ||| |||||||||||||||    
T  24350463 tagcttatgcaaataaataagattttatgttaattcataagttctt 24350508  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 28879197 - 28879152
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttctt 279  Q
    ||||||||||||||||||||  |||| ||| |||||||||||||||    
T  28879197 tagcttatgcaaataaataagcttttatgttaattcataagttctt 28879152  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 37712209 - 37712164
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttctt 279  Q
    ||||||||||||||||||||  |||| ||| |||||||||||||||    
T  37712209 tagcttatgcaaataaataaacttttatgttaattcataagttctt 37712164  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 48819441 - 48819397
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    ||||||||||||||||||||  |||| ||| ||||||||||||||    
T  48819441 tagcttatgcaaataaataagcttttatgttaattcataagttct 48819397  T

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Target: scaffold0157 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 24889 - 24845
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    |||||||||||||||||||| ||||| ||| |||| |||||||||    
T  24889 tagcttatgcaaataaataagtttttatgttaatttataagttct 24845  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 3210933 - 3210977
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    ||||||||||||||||||||  |||| ||| ||||||||||||||    
T  3210933 tagcttatgcaaataaataagcttttatgttaattcataagttct 3210977  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 35071372 - 35071416
Alignment:
Q  234 tagcttatgcaaataaataactttttgtgtcaattcataagttct 278  Q
    ||||||||||||||||||||  |||| ||| ||||||||||||||    
T  35071372 tagcttatgcaaataaataagcttttatgttaattcataagttct 35071416  T

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