View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_69 (Length: 294)

Name: NF7607_low_69
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_69
NF7607_low_69
[»] chr6 (33 HSPs)
chr6 (105-283)||(29949853-29950031)
chr6 (105-283)||(29953650-29953828)
chr6 (106-283)||(24934532-24934709)
chr6 (105-283)||(24739151-24739329)
chr6 (105-283)||(24942065-24942243)
chr6 (141-283)||(30154365-30154507)
chr6 (126-283)||(30149392-30149549)
chr6 (155-283)||(30053292-30053420)
chr6 (105-276)||(30134997-30135168)
chr6 (105-283)||(21160581-21160759)
chr6 (127-283)||(24897942-24898098)
chr6 (7-108)||(29949411-29949511)
chr6 (7-108)||(29953208-29953308)
chr6 (106-283)||(30029003-30029180)
chr6 (142-283)||(30577761-30577902)
chr6 (9-101)||(24738710-24738802)
chr6 (14-86)||(30029755-30029827)
chr6 (105-226)||(16702111-16702232)
chr6 (9-73)||(24942549-24942613)
chr6 (9-103)||(30135516-30135609)
chr6 (7-88)||(30149932-30150014)
chr6 (27-86)||(24731262-24731321)
chr6 (28-103)||(24935057-24935131)
chr6 (157-216)||(16517626-16517685)
chr6 (27-86)||(24263285-24263344)
chr6 (27-86)||(24886099-24886158)
chr6 (7-101)||(24898469-24898562)
chr6 (137-214)||(15714983-15715060)
chr6 (47-84)||(15726742-15726779)
chr6 (33-86)||(24889785-24889838)
chr6 (21-86)||(29929680-29929745)
chr6 (33-86)||(30999537-30999590)
chr6 (9-101)||(21160140-21160232)
[»] chr4 (2 HSPs)
chr4 (105-283)||(44262549-44262727)
chr4 (47-88)||(44262146-44262187)
[»] scaffold0110 (2 HSPs)
scaffold0110 (126-283)||(43846-44003)
scaffold0110 (7-88)||(43381-43463)
[»] chr3 (3 HSPs)
chr3 (105-283)||(24226685-24226863)
chr3 (104-211)||(11991249-11991356)
chr3 (54-86)||(11991719-11991751)
[»] chr8 (1 HSPs)
chr8 (7-88)||(9782951-9783033)
[»] scaffold0308 (2 HSPs)
scaffold0308 (109-214)||(8929-9034)
scaffold0308 (54-86)||(9402-9434)
[»] chr7 (1 HSPs)
chr7 (156-232)||(13093540-13093616)
[»] scaffold0654 (1 HSPs)
scaffold0654 (105-214)||(1176-1285)
[»] scaffold0652 (1 HSPs)
scaffold0652 (105-190)||(1251-1336)
[»] scaffold0014 (3 HSPs)
scaffold0014 (105-214)||(121436-121545)
scaffold0014 (54-86)||(140667-140699)
scaffold0014 (47-86)||(137781-137820)
[»] scaffold0572 (1 HSPs)
scaffold0572 (105-214)||(3167-3276)
[»] scaffold0019 (1 HSPs)
scaffold0019 (54-86)||(125683-125715)
[»] scaffold0086 (1 HSPs)
scaffold0086 (47-86)||(30871-30910)
[»] scaffold0177 (1 HSPs)
scaffold0177 (54-86)||(27760-27792)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 29949853 - 29950031
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29949853 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgacaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 29949952  T
Q  205 gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29949953 gagaattgtatgatacagtatctggagtcatattactggaatgcatttctttgaagagattcgcagcttcattcaccat 29950031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 29953650 - 29953828
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    |||||||||||||||||| | ||||| | | ||| ||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29953650 ttgtaagtgatcacattaaccggttgacatctattatgcatctcatctataagatcccaaacatcagagatgctccctgatttgcaaagtccatcaataa 29953749  T
Q  205 gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    |||||||||||||||  ||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29953750 gagaattgtatgatattgtatcaggagtcatatttctggaatgcatatctttgaagagattcgcagcttcattcaccat 29953828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 283
Target Start/End: Complemental strand, 24934709 - 24934532
Alignment:
Q  106 tgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataag 205  Q
    |||||||||||||||  |||||||||||| ||| ||||||||| |  | |||||||||| ||||||||||||||||  |||||  ||| ||||| |||||    
T  24934709 tgtaagtgatcacatcggcaggttggcctctattatgcatctcatttacaagatcccaagcatcagagattctcccatatttgagaagaccatcgataag 24934610  T
Q  206 agaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
     |||||||||| ||||||||| |||| |||| || |||||||||||||||||||||||||  | ||||||| ||||||    
T  24934609 tgaattgtatgttacagtattaggagccatacttttggaatgcatttctttgaagagattaacggcttcatccaccat 24934532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 24739151 - 24739329
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||| |  | |||||||||| ||||| |||||||||| ||||||  ||| ||||| ||||    
T  24739151 ttgtaagtgatcacatcagcaggttggcctctattatgcatctcatttacaagatcccaagcatcaaagattctcccagatttgtgaagaccatcgataa 24739250  T
Q  205 gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    | ||| |||||| ||||||||| |||| |||| || |||||||||||||||||| ||||||  | ||||||| ||||||    
T  24739251 gtgaactgtatgttacagtattaggagccatacttttggaatgcatttctttgaggagattaacggcttcatccaccat 24739329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 283
Target Start/End: Complemental strand, 24942243 - 24942065
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    ||||| |||||||||| ||||||||||||| ||| ||||||||| || | |||||||||||||||||||||||| || ||||||||||||||||||||||    
T  24942243 ttgtacgtgatcacatcagcaggttggcctctattatgcatctcatctataagatcccaaacatcagagattcttcccgatttgcaaagtccatcaataa 24942144  T
Q  205 gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    | ||| |||||  || | |||  |||| ||| |||||   ||||| |||||||||||||||  | ||||||| ||||||    
T  24942143 gcgaactgtatactataatatcaggagccatgtttcttatatgcaattctttgaagagattgacggcttcatccaccat 24942065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 283
Target Start/End: Complemental strand, 30154507 - 30154365
Alignment:
Q  141 tgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttc 240  Q
    |||||||| || | ||||| ||||||||||||||||||||| ||||||||||| || |||||||| |||||||||| || |||||| ||||||| | ||     
T  30154507 tgcatctcatctataagataccaaacatcagagattctccccgatttgcaaagcccgtcaataagggaattgtatgttatagtattaggagtcaaacttt 30154408  T
Q  241 tggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    |||||||||||||||| |||||| || ||||||||| ||||||    
T  30154407 tggaatgcatttctttaaagagaatcacagcttcatccaccat 30154365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 283
Target Start/End: Complemental strand, 30149549 - 30149392
Alignment:
Q  126 ggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtat 225  Q
    ||||| ||| ||||||||||||| || | || ||||||||||||||| | ||||||| |||||||||||||||||||||| |||||||||| |||||| |    
T  30149549 ggttgacctctatcatgcatctcatctataaaatcccaaacatcagatactctccctaatttgcaaagtccatcaataagggaattgtatgttacagtgt 30149450  T
Q  226 ttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    | ||| |||||| | | ||||||||||||||||| |||||  | ||||||| ||||||    
T  30149449 taggaatcatatctttcgaatgcatttctttgaaaagatttacggcttcatccaccat 30149392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 30053420 - 30053292
Alignment:
Q  155 aagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttct 254  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||  |||||||| |||||||| ||| |  |||||||||||    
T  30053420 aagatcccaaacatcagagattcttcccgatttgcaaagtccatcaataagtgaactgtatgtaacagtattaggagtcatgttttttaaatgcatttct 30053321  T
Q  255 ttgaagagattcgcagcttcattcaccat 283  Q
    ||||| || ||| ||||||||| ||||||    
T  30053320 ttgaaaagtttcacagcttcatccaccat 30053292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 276
Target Start/End: Complemental strand, 30135168 - 30134997
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    |||||||||||||||||||||||||| ||| | ||||||||||| || | ||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  30135168 ttgtaagtgatcacattagcaggttgacctctttcatgcatctcatctataagatcccaaacatcagaggttctccccgatatgcaaagtccatcaataa 30135069  T
Q  205 gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcat 276  Q
    | ||| |||| |  |  || |  ||||||||  || ||||||||||||| || ||||||||| | |||||||    
T  30135068 gcgaagtgtacgtgaatgtgtcaggagtcattcttttggaatgcatttcgtttaagagattcacggcttcat 30134997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 21160581 - 21160759
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||| |  | |||||||||| ||||||||||||||||  |||||  ||| ||||| ||||    
T  21160581 ttgtaagtgatcacatcagcaggttggcctctattatgcatctcatttacaagatcccaagcatcagagattctcccatatttgagaagaccatcgataa 21160680  T
Q  205 gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    | |||||||||| |||| |||  |||| ||| ||| |  ||||||||||||| ||||||||  | ||||||| ||||||    
T  21160681 gtgaattgtatgttacaatatcaggagccatgttttttaaatgcatttctttaaagagattaacggcttcatccaccat 21160759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 283
Target Start/End: Complemental strand, 24898098 - 24897942
Alignment:
Q  127 gttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatt 226  Q
    |||| ||| |||||||||| || || | |||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||| |||||| |||| |||     
T  24898098 gttgacctctatcatgcatatcatctataagatcccaaacatcagatattttccccgatttgcaaagtccatcaataagtgaactgtatgctacaatatc 24897999  T
Q  227 tggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
     |||| ||| ||| |  |||||| |||||||||||||||  ||||||||| ||||||    
T  24897998 aggagccatgttttttaaatgcaattctttgaagagattgacagcttcatccaccat 24897942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 29949411 - 29949511
Alignment:
Q  7 aacaaattgtaacaagaaagcatctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttcacagcgtcatcattcttgtt 106  Q
    |||||||| ||||  ||||||||||||||||||||||| || | |  ||||||||| |||||||||||||||||||||| ||||| | ||||||||||||    
T  29949411 aacaaattttaacttgaaagcatctcacctagttttacatt-atagtagacctctaacaatcatttcacgaagaagtttaacagccttatcattcttgtt 29949509  T
Q  107 gt 108  Q
    ||    
T  29949510 gt 29949511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 29953208 - 29953308
Alignment:
Q  7 aacaaattgtaacaagaaagcatctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttcacagcgtcatcattcttgtt 106  Q
    |||||||| ||||  ||||||||||||||||||||||| || | |  ||||||||| |||||||||||||||||||||| ||||| | ||||||||||||    
T  29953208 aacaaattttaacttgaaagcatctcacctagttttacatt-atagtagacctctaacaatcatttcacgaagaagtttaacagccttatcattcttgtt 29953306  T
Q  107 gt 108  Q
    ||    
T  29953307 gt 29953308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 283
Target Start/End: Complemental strand, 30029180 - 30029003
Alignment:
Q  106 tgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataag 205  Q
    |||| |||||||||||||| | ||| ||| |||||  |||||| |||| ||||||| ||||||  || ||||| || ||||| |||||||||| ||||||    
T  30029180 tgtacgtgatcacattagctgcttgacctctatcacacatctcatcaataagatccaaaacatacgaaattcttccggatttacaaagtccataaataag 30029081  T
Q  206 agaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    ||||||||| |  || ||||| |||  ||||||||   |||||||||  || || |||||| ||||||||| ||||||    
T  30029080 agaattgtacgtcaccgtattaggaaccatatttcgtaaatgcattttcttaaaaagattcacagcttcatccaccat 30029003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 283
Target Start/End: Original strand, 30577761 - 30577902
Alignment:
Q  142 gcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttct 241  Q
    ||||||| || | |||||||||||||| ||||||||| ||  |||||| |||||| |||||||| | | |||||| || |||||  ||||||||| || |    
T  30577761 gcatctcatctataagatcccaaacataagagattcttcccaatttgccaagtccgtcaataagggtactgtatgttatagtatcaggagtcatactttt 30577860  T
Q  242 ggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    | | ||||||||||| |||||| || ||||||||| ||||||    
T  30577861 gaattgcatttctttaaagagaatcacagcttcatccaccat 30577902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 24738710 - 24738802
Alignment:
Q  9 caaattgtaacaagaaagcatctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttcacagcgtcatcattc 101  Q
    ||||||||||| | |||||||||||||| |||||| | ||| |  ||||||||||||||||||||||||||||||| ||| || | |||||||    
T  24738710 caaattgtaactaaaaagcatctcaccttgttttattcttatagtagacctctagcaatcatttcacgaagaagttccactgccttatcattc 24738802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 30029827 - 30029755
Alignment:
Q  14 tgtaacaagaaagcatctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttc 86  Q
    |||||| ||| ||||||||||||  ||||||| |||||| |||||||||||||||||||||| ||||||||||    
T  30029827 tgtaactagatagcatctcaccttcttttactcttacaatagacctctagcaatcatttcacaaagaagtttc 30029755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 16702111 - 16702232
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    ||||||||||| ||||| | |||||||||| ||||| ||||||  |||||||| | |||| ||| ||| | |||||| |||||||| | |||||||||||    
T  16702111 ttgtaagtgattacattgggaggttggcctctatcacgcatctgatcaagaagcttccaagcatgagaaagtctcccagatttgcagaatccatcaataa 16702210  T
Q  205 gagaattgtatgatacagtatt 226  Q
    |||  ||||| ||||| |||||    
T  16702211 gagtgttgtaagatactgtatt 16702232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 24942613 - 24942549
Alignment:
Q  9 caaattgtaacaagaaagcatctcacctagttttacttttacaaaagacctctagcaatcatttc 73  Q
    ||||||||||| |||||||||||||||| || ||||| |||||| ||||||||||||| ||||||    
T  24942613 caaattgtaacgagaaagcatctcaccttgtcttactcttacaatagacctctagcaaccatttc 24942549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 30135609 - 30135516
Alignment:
Q  9 caaattgtaacaagaaagcatctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttcacagcgtcatcattctt 103  Q
    |||||||||||  |||||||||||| |||||||||  || |||  ||||||||| |||||||||||| |||||||||||| || | |||||||||    
T  30135609 caaattgtaacttgaaagcatctcaactagttttagatt-acagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattctt 30135516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 30150014 - 30149932
Alignment:
Q  7 aacaaattgtaacaagaaagcatctcacctagttttact-tttacaaaagacctctagcaatcatttcacgaagaagtttcac 88  Q
    ||||||||||| | ||||| ||||| ||||||||||||| |||| |  ||||||||||||||||||||||||| || ||||||    
T  30150014 aacaaattgtacctagaaaacatcttacctagttttactctttagagtagacctctagcaatcatttcacgaataaatttcac 30149932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 24731321 - 24731262
Alignment:
Q  27 catctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttc 86  Q
    ||||||||||||||| | | |||||  |||||||| ||||||||||||||||||||||||    
T  24731321 catctcacctagtttcagtcttacagtagacctcttgcaatcatttcacgaagaagtttc 24731262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 24935131 - 24935057
Alignment:
Q  28 atctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttcacagcgtcatcattctt 103  Q
    ||||||||| ||||||| || |||| | ||||||||||||||||||||| ||||||||||| || | |||||||||    
T  24935131 atctcacctggttttacatt-acaatatacctctagcaatcatttcacgtagaagtttcaccgccttatcattctt 24935057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 16517685 - 16517626
Alignment:
Q  157 gatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatg 216  Q
    |||| ||||||||||||| |||||||  ||||||||||  ||||||||| ||||||||||    
T  16517685 gatcacaaacatcagagaatctccctcgtttgcaaagtaaatcaataagtgaattgtatg 16517626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 24263285 - 24263344
Alignment:
Q  27 catctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttc 86  Q
    ||||| ||||||||| | | |||||| |||||||| | ||||||||||||||||||||||    
T  24263285 catcttacctagtttcagtcttacaatagacctcttgtaatcatttcacgaagaagtttc 24263344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 24886099 - 24886158
Alignment:
Q  27 catctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttc 86  Q
    ||||||||||||||| | |||||||  |||||||| || ||||||||||| |||||||||    
T  24886099 catctcacctagtttcagttttacagtagacctctcgcgatcatttcacggagaagtttc 24886158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 24898562 - 24898469
Alignment:
Q  7 aacaaattgtaacaagaaagcatctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttcacagcgtcatcattc 101  Q
    |||| |||||||| ||||| || ||||| |||||||||| |||||  |||||||||| || ||||||||| || |||||||| || | |||||||    
T  24898562 aacagattgtaactagaaaacaactcac-tagttttactcttacagtagacctctagaaagcatttcacggaggagtttcacggccttatcattc 24898469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 15714983 - 15715060
Alignment:
Q  137 atcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgta 214  Q
    |||||||||||  |||||||| |||||| ||| ||| | |||||| |||||||| |  ||||||||||||||| ||||    
T  15714983 atcatgcatcttatcaagaagctcccaagcatgagaaactctcccagatttgcataaaccatcaataagagaactgta 15715060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 15726742 - 15726779
Alignment:
Q  47 ttacaaaagacctctagcaatcatttcacgaagaagtt 84  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  15726742 ttacaatagacctctagcaatcatttcacgtagaagtt 15726779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 24889785 - 24889838
Alignment:
Q  33 acctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttc 86  Q
    ||||||||||| |||||||  || |||||  |||||||||||||||||||||||    
T  24889785 acctagttttaattttacagtagccctctcacaatcatttcacgaagaagtttc 24889838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 29929745 - 29929680
Alignment:
Q  21 agaaagcatctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttc 86  Q
    ||||| ||||| ||||||||| | | |||||| || ||||| | ||||||||||||||||||||||    
T  29929745 agaaaacatcttacctagtttcagtcttacaataggcctctcgtaatcatttcacgaagaagtttc 29929680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 30999537 - 30999590
Alignment:
Q  33 acctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttc 86  Q
    ||||||||| | |||||||  || ||||| ||||||||||||||||||||||||    
T  30999537 acctagtttcaattttacagtagccctctcgcaatcatttcacgaagaagtttc 30999590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 21160140 - 21160232
Alignment:
Q  9 caaattgtaacaagaaagcatctcacctagttttacttttacaaaagacctctagcaatcatttcacgaagaagtttcacagcgtcatcattc 101  Q
    ||||||||||| | ||||||| |||||| |||||| | ||| |  ||| ||||| ||||||||| ||||||||||| ||| || | |||||||    
T  21160140 caaattgtaactaaaaagcatatcacctggttttattcttatagtagatctctaacaatcattttacgaagaagttccactgccttatcattc 21160232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 44262549 - 44262727
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||| || | |||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  44262549 ttgtaagtgataacatcagcaggttggcctatattatgcatctcatctataagatcccaaacatcagatattcttcctgatttgcaaagtccatcaataa 44262648  T
Q  205 gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    | |||||||||| || |||||  |||| ||| ||| |    |||| |||||||||||||||  | ||||||| ||||||    
T  44262649 gtgaattgtatgttatagtatcgggagccatgttttttatttgcagttctttgaagagattgacggcttcatccaccat 44262727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 44262146 - 44262187
Alignment:
Q  47 ttacaaaagacctctagcaatcatttcacgaagaagtttcac 88  Q
    |||||| | ||||||| |||||||||||||||||||||||||    
T  44262146 ttacaatatacctctaacaatcatttcacgaagaagtttcac 44262187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 43846 - 44003
Alignment:
Q  126 ggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtat 225  Q
    ||||| ||| ||||||||||||| || | || ||||||| ||||||| ||||||||| ||||||||||||||||||| |  |||||||||| |||||| |    
T  43846 ggttgacctctatcatgcatctcatctataaaatcccaagcatcagacattctccctaatttgcaaagtccatcaattaaggaattgtatgttacagtgt 43945  T
Q  226 ttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    | |||  ||||||| |||||||||||||||||||||||||  | ||||||| ||||||    
T  43946 taggaaccatatttttggaatgcatttctttgaagagattaactgcttcatccaccat 44003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 43381 - 43463
Alignment:
Q  7 aacaaattgtaacaagaaagcatctcacctagttttact-tttacaaaagacctctagcaatcatttcacgaagaagtttcac 88  Q
    ||||||||||||  ||||| ||||| ||||||||||||| |||| |  |||||||||||||||||||||||||  ||||||||    
T  43381 aacaaattgtaagtagaaaacatcttacctagttttactctttagagtagacctctagcaatcatttcacgaatcagtttcac 43463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 105 - 283
Target Start/End: Complemental strand, 24226863 - 24226685
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    ||||||||||| |  ||||| ||||| ||| |||||||||||||  | |  | ||||||||||||| | ||||||| ||||||||||||||||||||| |    
T  24226863 ttgtaagtgattatgttagctggttgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccttgatttgcaaagtccatcaatta 24226764  T
Q  205 gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat 283  Q
    | |||||||||| |||||| |  |||  ||||||| ||||||||||||||||||| ||||| || ||||||| ||||||    
T  24226763 gggaattgtatgctacagtgtcaggaaccatatttttggaatgcatttctttgaaaagatttgcggcttcatccaccat 24226685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 11991356 - 11991249
Alignment:
Q  104 gttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaata 203  Q
    |||||||||||  | ||| || ||||| ||  |||||||||| || |||| ||| |||||| |||  |||||||||||||||||||| |  ||||||||     
T  11991356 gttgtaagtgaatatattggctggttgaccattatcatgcatttcatcaacaagctcccaagcataggagattctccctgatttgcacaaaccatcaatg 11991257  T
Q  204 agagaatt 211  Q
    ||||||||    
T  11991256 agagaatt 11991249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 11991751 - 11991719
Alignment:
Q  54 agacctctagcaatcatttcacgaagaagtttc 86  Q
    ||||||||||||||||||||||| |||||||||    
T  11991751 agacctctagcaatcatttcacgcagaagtttc 11991719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 9783033 - 9782951
Alignment:
Q  7 aacaaattgtaacaagaaagcatctcacctagttttact-tttacaaaagacctctagcaatcatttcacgaagaagtttcac 88  Q
    |||||| ||||||  |||||||||||||||||||||||| |||| || |||||||||||||||||||||| ||||||||||||    
T  9783033 aacaaactgtaaccggaaagcatctcacctagttttactctttagaacagacctctagcaatcatttcacaaagaagtttcac 9782951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 9034 - 8929
Alignment:
Q  109 aagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagaga 208  Q
    ||||||| ||||| |||||||| ||| ||||||||||||| ||||| |  |||||| ||| ||| ||||||||||||||||| |  ||||||||||||||    
T  9034 aagtgattacattggcaggttgacctctatcatgcatctcatcaagcaactcccaagcatgagaaattctccctgatttgcacaaaccatcaataagaga 8935  T
Q  209 attgta 214  Q
    | ||||    
T  8934 actgta 8929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 9434 - 9402
Alignment:
Q  54 agacctctagcaatcatttcacgaagaagtttc 86  Q
    ||||||||||||||||||||||| |||||||||    
T  9434 agacctctagcaatcatttcacgtagaagtttc 9402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 13093540 - 13093616
Alignment:
Q  156 agatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagt 232  Q
    ||||| ||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||| |||| |||| |||||    
T  13093540 agatcacaaacatcatagaatctctctgatttgcaaagtccatcaataagtgaattgtatgttacaatattaggagt 13093616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 1176 - 1285
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    ||||||||||||||||| ||| |||| ||| ||||||||||||  |||||||| |||||  ||| ||| ||| |||||| |||||| |  |||||||| |    
T  1176 ttgtaagtgatcacatttgcatgttgacctctatcatgcatctaatcaagaagctcccatgcatgagaaattttccctgctttgcacaaaccatcaatga 1275  T
Q  205 gagaattgta 214  Q
    ||||||||||    
T  1276 gagaattgta 1285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 1251 - 1336
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgca 190  Q
    ||||||||||||||||  |||||||| ||| ||||||||||||  |||||||| |||||  ||| ||| |||||||||||||||||    
T  1251 ttgtaagtgatcacatcggcaggttgacctctatcatgcatctgatcaagaagctcccatgcatgagaaattctccctgatttgca 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 121436 - 121545
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    ||||| ||||| | ||| |||||||| ||| ||||||||||||  |||||||| |||||  ||| ||||||||||||||||||||| |   |||||||||    
T  121436 ttgtatgtgataatattggcaggttgacctctatcatgcatctgatcaagaagctcccatgcatgagagattctccctgatttgcacaaagcatcaataa 121535  T
Q  205 gagaattgta 214  Q
    ||||| ||||    
T  121536 gagaactgta 121545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 140699 - 140667
Alignment:
Q  54 agacctctagcaatcatttcacgaagaagtttc 86  Q
    |||||||||||||||||||||||||||||||||    
T  140699 agacctctagcaatcatttcacgaagaagtttc 140667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 137820 - 137781
Alignment:
Q  47 ttacaaaagacctctagcaatcatttcacgaagaagtttc 86  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  137820 ttacaatagacctctagcaaccatttcacgaagaagtttc 137781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 3276 - 3167
Alignment:
Q  105 ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa 204  Q
    ||||||||||| | || ||| ||||| ||  ||||| ||||||| |||| ||| |||||| |||  ||||||||||| |||||||| |  |||||||| |    
T  3276 ttgtaagtgattatatcagctggttgaccactatcacgcatctcatcaacaagctcccaagcataggagattctcccagatttgcacaaaccatcaatta 3177  T
Q  205 gagaattgta 214  Q
    ||||||||||    
T  3176 gagaattgta 3167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 125683 - 125715
Alignment:
Q  54 agacctctagcaatcatttcacgaagaagtttc 86  Q
    |||||||||||||||||||||||||||||||||    
T  125683 agacctctagcaatcatttcacgaagaagtttc 125715  T

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Target: scaffold0086 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 30871 - 30910
Alignment:
Q  47 ttacaaaagacctctagcaatcatttcacgaagaagtttc 86  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  30871 ttacaatagacctctaacaatcatttcacgaagaagtttc 30910  T

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Target: scaffold0177 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 27792 - 27760
Alignment:
Q  54 agacctctagcaatcatttcacgaagaagtttc 86  Q
    ||||||||||||||||||||||| |||||||||    
T  27792 agacctctagcaatcatttcacgtagaagtttc 27760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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