View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_8 (Length: 582)

Name: NF7607_low_8
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_8
NF7607_low_8
[»] chr4 (1 HSPs)
chr4 (15-572)||(43999946-44000503)
[»] chr2 (3 HSPs)
chr2 (140-432)||(8357531-8357822)
chr2 (460-572)||(8357422-8357534)
chr2 (93-125)||(30544415-30544447)
[»] chr3 (5 HSPs)
chr3 (140-432)||(39293904-39294195)
chr3 (460-572)||(39294192-39294304)
chr3 (15-96)||(5572590-5572672)
chr3 (246-340)||(35212717-35212811)
chr3 (95-135)||(44301685-44301724)
[»] chr8 (1 HSPs)
chr8 (211-271)||(26894377-26894437)
[»] chr7 (1 HSPs)
chr7 (94-135)||(34947630-34947670)
[»] chr5 (1 HSPs)
chr5 (95-124)||(32440274-32440303)
[»] chr1 (1 HSPs)
chr1 (92-125)||(49223939-49223972)
[»] chr6 (1 HSPs)
chr6 (95-135)||(17829062-17829101)


Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 15 - 572
Target Start/End: Complemental strand, 44000503 - 43999946
Alignment:
Q  15 tcaataaattatacacagcatcttataaatggaaagtttgtggatgctgcatcaggtaatgtttaaagatcgttgcttgttactccctccgtctcaaaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000503 tcaataaattatacacagcatcttataaatggaaagtttgtggatgctgcatcaggtaatgtttaaagatcgttgcttgttactccctccgtctcaaaat 44000404  T
Q  115 aatagtcgttttaaggtttgtctcgaaaaatcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000403 aatagtcgttttaaggtttgtctcgaaaaatcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagg 44000304  T
Q  215 gaaaacatttccaacacttgatccacgcacaggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtatcagcagctcgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44000303 gaaaacatttccaacacttgatccacgcacaggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgt 44000204  T
Q  315 gaggcctttgataatggaccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaattta 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000203 gaggcctttgataatggaccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaattta 44000104  T
Q  415 cgttgatgattacttattaataactccttcaggaaagatgtcgtatattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctct 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000103 cgttgatgattacttattaataactccttcaggaaagatgtcgtatattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctct 44000004  T
Q  515 ggaggcatggaacaatggaaagctttatgaacaggctgccaaagctgaagtacctatg 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000003 ggaggcatggaacaatggaaagctttatgaacaggctgccaaagctgaagtacctatg 43999946  T

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Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 140 - 432
Target Start/End: Complemental strand, 8357822 - 8357531
Alignment:
Q  140 aaaaatcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatcca 239  Q
    ||||||||| |||||| ||||||||||||||| ||| |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||    
T  8357822 aaaaatcatgtattgaatggaagtgagaacaaattacgctcttagattaaacatggagttt-ttttgatttcagggaaaacatttccaacacttgatcca 8357724  T
Q  240 cgcacaggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtatcagcagctcgtgaggcctttgataatggaccttggc 339  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  8357723 cgcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttggc 8357624  T
Q  340 ctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgattacttatt 432  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| || ||||||||||||| |||||||    
T  8357623 ctaaaatgaatgcttatgtaagcatttccttcagagtgtcctttcttacatgaacttatattagttttaaaattacgttgatgatgacttatt 8357531  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 460 - 572
Target Start/End: Complemental strand, 8357534 - 8357422
Alignment:
Q  460 tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc 559  Q
    ||||| |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  8357534 tattgctgcgttttgctgatttggttgagaagcacaatgcttagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc 8357435  T
Q  560 tgaagtacctatg 572  Q
    | | |||||||||    
T  8357434 ttatgtacctatg 8357422  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 30544447 - 30544415
Alignment:
Q  93 gttactccctccgtctcaaaataatagtcgttt 125  Q
    ||||||||||||||||| |||||||||||||||    
T  30544447 gttactccctccgtctctaaataatagtcgttt 30544415  T

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Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 140 - 432
Target Start/End: Original strand, 39293904 - 39294195
Alignment:
Q  140 aaaaatcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatcca 239  Q
    ||||||||| |||| | ||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  39293904 aaaaatcatgtattaaatggaagtgagaacaagttacgctcttagattaaacatggagtt-cttttgatttcagggaaaacatttccaacacttgatcca 39294002  T
Q  240 cgcacaggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtatcagcagctcgtgaggcctttgataatggaccttggc 339  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||| |    
T  39294003 cgcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagcttgcgaggcctttcataatggaccttgac 39294102  T
Q  340 ctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgattacttatt 432  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||| |||||| || ||||||||||||| |||||||    
T  39294103 ctaaaatgagtgcttatgtaagcatttccttcagcgtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttatt 39294195  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 460 - 572
Target Start/End: Original strand, 39294192 - 39294304
Alignment:
Q  460 tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc 559  Q
    ||||| |||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  39294192 tattgctgcgttttgctgatttggttgagaagcacaatgccgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc 39294291  T
Q  560 tgaagtacctatg 572  Q
    | | |||||||||    
T  39294292 taacgtacctatg 39294304  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 5572590 - 5572672
Alignment:
Q  15 tcaataaattatacacagcatcttataaatggaaagtttgtggatgctgcatcaggtaatgtttaaagatcg-ttgcttgtta 96  Q
    ||||| || |||||||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||||| | ||||||||||    
T  5572590 tcaatgaactatacacaacatcttataaatggaaaatttgtggatgatgcatcaggtaatgtataaagattgtttgcttgtta 5572672  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 35212811 - 35212717
Alignment:
Q  246 ggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtatcagcagctcgtgaggcctttgataatggaccttggcc 340  Q
    |||||||||||||||||||||||||||||||||   |||||||| || ||||||||||| |||||| |  |||| |||||| | ||||| |||||    
T  35212811 ggggaagtgattgctcatgttgctgaaggtgatcaagaagatatcaatcgtgcagtatctgcagctagaaaggcttttgatgaaggaccatggcc 35212717  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 44301724 - 44301685
Alignment:
Q  95 tactccctccgtctcaaaataatagtcgttttaaggtttgt 135  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  44301724 tactccctccgtctcaaaataatggtcg-tttaaggtttgt 44301685  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 26894377 - 26894437
Alignment:
Q  211 cagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcatgttgctga 271  Q
    |||| ||||||||||||||| | |||||| | |||||||||||||||||||||||||||||    
T  26894377 caggtaaaacatttccaacattggatccaaggacaggggaagtgattgctcatgttgctga 26894437  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 34947670 - 34947630
Alignment:
Q  94 ttactccctccgtctcaaaataatagtcgttttaaggtttgt 135  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  34947670 ttactccctccgtctctaaataatagtcg-tttaaggtttgt 34947630  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 124
Target Start/End: Complemental strand, 32440303 - 32440274
Alignment:
Q  95 tactccctccgtctcaaaataatagtcgtt 124  Q
    ||||||||||||||||||||||||||||||    
T  32440303 tactccctccgtctcaaaataatagtcgtt 32440274  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 49223939 - 49223972
Alignment:
Q  92 tgttactccctccgtctcaaaataatagtcgttt 125  Q
    |||||||||||||||||| |||||||||||||||    
T  49223939 tgttactccctccgtctctaaataatagtcgttt 49223972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 17829101 - 17829062
Alignment:
Q  95 tactccctccgtctcaaaataatagtcgttttaaggtttgt 135  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  17829101 tactctctccgtctcaaaataatagtc-ttttaaggtttgt 17829062  T

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