View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_86 (Length: 248)
Name: NF7607_low_86
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_86 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 40846288 - 40846529
Alignment:
| Q |
7 |
aagaaaattcaaccatatgtgtgaaaaaaggagaatgtttgtggagcttgatgaatcagtaagtggcaatgtctcatttggcgatgattccaaggttcta |
106 |
Q |
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| T |
40846288 |
aagaaaattcaaccatatgtgtgaaaaaaggagaatgtttgtggagcttgatgaatcagtaagtggcaatgtctcatttggcgatgatcccaaggttcta |
40846387 |
T |
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| Q |
107 |
gtgaaagtgtctcatttaatttgtttaacaatgcggtgtatttgatggagtgtaacaacctcaatttaaagttctttgaagatgcattatggaaatctgt |
206 |
Q |
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| T |
40846388 |
atgaaagtgtctcatttaatttggttaacgatgcggtgtatttgatggagtgtaacaacctcaatttaaagttctttgaagatgcattatggaaatctgt |
40846487 |
T |
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| Q |
207 |
tatatgttgcagggtatttctcgtgttagtgttgaggaaggc |
248 |
Q |
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| T |
40846488 |
tatatgttgcagggtatttctcgtgttagtgttgaggaaggc |
40846529 |
T |
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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 4890640 - 4890548
Alignment:
| Q |
20 |
catatgtgtgaaaaaaggagaatgtttgtggagcttgatgaatcagtaagtggcaatgtctcatttggcgatgattccaaggttctagtgaaa |
112 |
Q |
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| T |
4890640 |
catatgtgtgggaaaaggagcatgtttgtagagcttgatgaatcagtgtgtggcaatgtctcatttggcgatgattccaagattccagtgaaa |
4890548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 34645979 - 34646063
Alignment:
| Q |
16 |
caaccatatgtgtgaaaaaaggagaatgtttgtggagcttgatgaatcagtaagtggcaatgtctcatttggcgatgattccaag |
100 |
Q |
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| T |
34645979 |
caaccatatgtgtggaaataggagcatgttcgtaaaacttgatgaatcattaagtggaattgtctcatttgtcgacgattccaag |
34646063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 21745796 - 21745757
Alignment:
| Q |
48 |
tggagcttgatgaatcagtaagtggcaatgtctcatttgg |
87 |
Q |
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| T |
21745796 |
tggatcttgatgaatcagtaagtgacaatgtctcatttgg |
21745757 |
T |
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