View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_9 (Length: 582)
Name: NF7607_low_9
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 36 - 574
Target Start/End: Original strand, 14782713 - 14783248
Alignment:
| Q |
36 |
atgatggctgagagaatgagattgaaaacaagctgtgaagatagcaaaagtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagat |
135 |
Q |
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| T |
14782713 |
atgatggctgagagaatgagattgaaaacaagctgtgaagatagcaaaagtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagat |
14782812 |
T |
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| Q |
136 |
tgttaaaccctaacatgataccaacaaaaattgatagggttaacatttttggtgtgaaatcagtgaaggggtttcttttggtgagattgaagagataagg |
235 |
Q |
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| T |
14782813 |
tgttaaaccctaacatgataccaacaaaaattgatagggttaacattttcggtgtgaaatcagtgaaagggtttcttttggtgagattgaagagataagg |
14782912 |
T |
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| Q |
236 |
gaggaaaattgggatgatcaagagagggaagccagcacattgaacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagt |
335 |
Q |
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| T |
14782913 |
gagaaaaattgggatgatcaagagagggaagccagcacattgaacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagt |
14783012 |
T |
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| Q |
336 |
aaacttgatgaggttgaaccaacaaagagtaagagaaagttgattatcaaaagtggcatgtaccttttgtttgtaatggatttttgatcatttgcatgca |
435 |
Q |
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| T |
14783013 |
aaacttgatgagattgaaccaacaaagagtaagagatagttgattatcaaaagtggcatgtaccttttgtttgtaatggatttttgatcatttgcatgca |
14783112 |
T |
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| Q |
436 |
ggtggtttttgttgttgacaaatggtgatggttgattttgatgttgttgtgtttcttcttcttgatgatcaatggcttcaatgtcaattgtgtcttcttt |
535 |
Q |
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| T |
14783113 |
ggtggtttttgttgttgacaaatggtgatggttgattttgatgttgttgtgt---ttcttcttgatgatcaatggcttcaatgtcaattgtgtcttcatt |
14783209 |
T |
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| Q |
536 |
gttggtagggttcatggtgagagattgatgatgatgatg |
574 |
Q |
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| T |
14783210 |
gttggtagggttcgtggtgagagattgatgatgatgatg |
14783248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 54 - 424
Target Start/End: Original strand, 14774854 - 14775227
Alignment:
| Q |
54 |
agattgaaaacaagctgtgaagatagcaaaagtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatga |
153 |
Q |
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| T |
14774854 |
agattgaaaactagctgtgaagataacaaaagggctgaggttgaaacaggtagatatgaatttccccatgagaagaaaaggttattgacacccaacataa |
14774953 |
T |
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| Q |
154 |
taccaacaaaaattgatagggttaacatttttggtgtgaaatcagtgaaggggtttcttttggtgagatt--gaagaga-taagggaggaaaattgggat |
250 |
Q |
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| T |
14774954 |
caccaatggaaattgataaagttaacatctttgggttgaaatctgaaaagggttttctttttgttgaatttagaagataataaggtgaaaaaattgggac |
14775053 |
T |
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| Q |
251 |
gatcaagagagggaagccagcacattgaacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttgatgaggtt |
350 |
Q |
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| T |
14775054 |
taataagagaggaaaacctgaagattgaacccaagttgaaacccatctactagaacctttatggataaaatagtactttgagagtaaacttgaagaaagt |
14775153 |
T |
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| Q |
351 |
gaaccaacaaagagtaagagaaagttgattatcaaaagtggcatgtaccttttgtttgtaatggatttttgatc |
424 |
Q |
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|| || |||||||| || || |||| || | |||||| || |||||||||||||| || |||| |||||||| |
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| T |
14775154 |
gaccctacaaagagcaaaaggtagttaataaccaaaaggggtatgtaccttttgttagtggtggacttttgatc |
14775227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34986433 - 34986400
Alignment:
| Q |
1 |
taaaactcatgctgattttacaagcacaaaaact |
34 |
Q |
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| T |
34986433 |
taaaactcatgctgattttacaaggacaaaaact |
34986400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34993249 - 34993216
Alignment:
| Q |
1 |
taaaactcatgctgattttacaagcacaaaaact |
34 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
34993249 |
taaaactcatgctgattttacaaggacaaaaact |
34993216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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