View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7607_low_94 (Length: 237)

Name: NF7607_low_94
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7607_low_94
NF7607_low_94
[»] chr4 (17 HSPs)
chr4 (1-219)||(39296644-39296862)
chr4 (1-138)||(39295454-39295591)
chr4 (1-138)||(17872565-17872702)
chr4 (138-226)||(1244720-1244808)
chr4 (138-226)||(48430194-48430282)
chr4 (134-226)||(27019510-27019603)
chr4 (138-219)||(5948965-5949047)
chr4 (1-51)||(33026238-33026288)
chr4 (138-219)||(36315469-36315551)
chr4 (138-219)||(36329678-36329760)
chr4 (132-192)||(7512583-7512643)
chr4 (138-184)||(4946327-4946373)
chr4 (137-192)||(6248256-6248311)
chr4 (138-192)||(9765473-9765527)
chr4 (138-192)||(27074176-27074230)
chr4 (138-192)||(27154267-27154321)
chr4 (169-226)||(34807058-34807115)
[»] chr5 (18 HSPs)
chr5 (137-226)||(1593776-1593865)
chr5 (138-226)||(39560384-39560472)
chr5 (138-226)||(40835810-40835898)
chr5 (136-226)||(22493707-22493797)
chr5 (138-226)||(16485715-16485802)
chr5 (138-226)||(5807563-5807651)
chr5 (140-226)||(39005653-39005739)
chr5 (138-219)||(16483275-16483357)
chr5 (134-184)||(23104627-23104677)
chr5 (138-184)||(28907544-28907590)
chr5 (138-184)||(28943939-28943985)
chr5 (138-182)||(25340110-25340154)
chr5 (10-69)||(38981716-38981775)
chr5 (138-184)||(1209774-1209820)
chr5 (132-218)||(22383860-22383946)
chr5 (138-192)||(36786619-36786673)
chr5 (138-185)||(14459020-14459067)
chr5 (138-192)||(22718527-22718581)
[»] chr1 (18 HSPs)
chr1 (138-226)||(45542187-45542275)
chr1 (137-226)||(21327400-21327489)
chr1 (137-226)||(41400342-41400431)
chr1 (146-226)||(2028595-2028675)
chr1 (138-219)||(49008948-49009029)
chr1 (138-226)||(2844668-2844755)
chr1 (136-219)||(32518971-32519055)
chr1 (137-226)||(28640795-28640884)
chr1 (137-219)||(18415313-18415396)
chr1 (138-219)||(24780642-24780723)
chr1 (137-219)||(8111465-8111547)
chr1 (138-192)||(38297036-38297090)
chr1 (138-219)||(38980336-38980416)
chr1 (138-184)||(16661991-16662037)
chr1 (138-184)||(42438819-42438865)
chr1 (146-192)||(13499675-13499721)
chr1 (138-192)||(24452288-24452342)
chr1 (138-182)||(32052903-32052947)
[»] chr8 (11 HSPs)
chr8 (137-235)||(9225234-9225332)
chr8 (138-226)||(39617123-39617211)
chr8 (136-219)||(18380576-18380660)
chr8 (138-226)||(12497989-12498076)
chr8 (138-219)||(6421683-6421765)
chr8 (137-184)||(40560557-40560604)
chr8 (138-192)||(13276687-13276741)
chr8 (138-192)||(33444411-33444465)
chr8 (138-182)||(16431315-16431359)
chr8 (137-192)||(36892605-36892660)
chr8 (138-184)||(22516980-22517025)
[»] chr3 (14 HSPs)
chr3 (138-219)||(22403145-22403226)
chr3 (136-226)||(4061611-4061700)
chr3 (136-226)||(37969945-37970034)
chr3 (136-226)||(33950909-33950999)
chr3 (138-219)||(3335179-3335260)
chr3 (146-226)||(28413298-28413378)
chr3 (21-138)||(45278389-45278506)
chr3 (137-192)||(35347752-35347807)
chr3 (138-192)||(10118748-10118802)
chr3 (137-192)||(43847939-43847994)
chr3 (132-217)||(23305457-23305541)
chr3 (137-192)||(54613291-54613346)
chr3 (146-192)||(26702554-26702600)
chr3 (138-182)||(38187506-38187550)
[»] chr7 (12 HSPs)
chr7 (135-226)||(46809808-46809899)
chr7 (138-226)||(6617799-6617886)
chr7 (137-219)||(21949071-21949153)
chr7 (131-219)||(31078707-31078795)
chr7 (138-219)||(34637713-34637795)
chr7 (138-219)||(42054404-42054486)
chr7 (137-226)||(9174105-9174193)
chr7 (134-192)||(44042485-44042543)
chr7 (138-192)||(18781563-18781617)
chr7 (138-192)||(35116480-35116534)
chr7 (140-182)||(35507998-35508040)
chr7 (138-192)||(37313028-37313082)
[»] chr6 (7 HSPs)
chr6 (146-226)||(15152889-15152969)
chr6 (138-219)||(18898118-18898200)
chr6 (134-226)||(22515302-22515394)
chr6 (131-184)||(4268559-4268612)
chr6 (137-192)||(9699929-9699984)
chr6 (136-183)||(1424561-1424608)
chr6 (138-192)||(14183110-14183164)
[»] scaffold0088 (1 HSPs)
scaffold0088 (131-219)||(26463-26551)
[»] scaffold0009 (1 HSPs)
scaffold0009 (138-219)||(193875-193957)
[»] chr2 (6 HSPs)
chr2 (136-226)||(40268530-40268625)
chr2 (138-192)||(39118927-39118981)
chr2 (138-219)||(4647225-4647305)
chr2 (137-192)||(12253591-12253646)
chr2 (138-182)||(42839915-42839959)
chr2 (136-185)||(6909146-6909195)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 39296862 - 39296644
Alignment:
Q  1 actactctattgatgaataaattgatgaatgataaaagatttacatttaatgaaccgaaatgaaattatacaaaatttgcttcttaatttaattttaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||    
T  39296862 actactctattgatgaataaattgatgaatgataaaagacttacatttaatgaatcgaaataaaattatacaaaatttgcttcttaacttaattttaggt 39296763  T
Q  101 aacattttaatcccaatttagtccgttatattataaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggttt 200  Q
    |||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  39296762 aacattttaatcccaatttagttcgttatgttataaagctagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaatagggttt 39296663  T
Q  201 acacataaataagtttttt 219  Q
    |||||||||||||||||||    
T  39296662 acacataaataagtttttt 39296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 39295591 - 39295454
Alignment:
Q  1 actactctattgatgaataaattgatgaatgataaaagatttacatttaatgaaccgaaatgaaattatacaaaatttgcttcttaatttaattttaagt 100  Q
    ||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||    
T  39295591 actactctattgatgaataaattgatgaaagataaaaaacttacatttaataaaccgaaatgaaattatacaaaatttacttcttaatttaattttaggt 39295492  T
Q  101 aacattttaatcccaatttagtccgttatattataaaa 138  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  39295491 aacattttagtcccaatttagtccgttatgttataaaa 39295454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 17872702 - 17872565
Alignment:
Q  1 actactctattgatgaataaattgatgaatgataaaagatttacatttaatgaaccgaaatgaaattatacaaaatttgcttcttaatttaattttaagt 100  Q
    ||||||| ||||| ||||||||||||||||||||||||  ||||||||||| |||  |||| |||||| | |||||||||||||||| ||||||||| ||    
T  17872702 actactccattgacgaataaattgatgaatgataaaaggcttacatttaataaactaaaataaaattacataaaatttgcttcttaacttaattttaggt 17872603  T
Q  101 aacattttaatcccaatttagtccgttatattataaaa 138  Q
    ||||||||| |||| ||||| ||| |||| ||||||||    
T  17872602 aacattttagtcccgatttaatcctttatgttataaaa 17872565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 1244720 - 1244808
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  1244720 actagtgtaacgcctcgtgccaagcacgggatacattttatttaaatttttttaacagggtttacacataaataagttttttagatatt 1244808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 48430282 - 48430194
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| ||||||  ||||||||||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||    
T  48430282 actagtgtaacgccatgtgccaagcacgggatacattttatttaaaatattttaacatggtttacacataaataagttttttagatatt 48430194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 27019510 - 27019603
Alignment:
Q  134 taaaactagtgaaacgcccc-gtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||||| ||| |||| ||||||||||||  |||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||||    
T  27019510 taaaactagtgtaacacccccgtgccaagcacgagatacattttatttaaatttttttaacagggtttacacataaataagtttattagatatt 27019603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 5949047 - 5948965
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaa-atgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| |||| |||||||||||||||| ||||||||||||||||  | |||||| ||||||||||||||||||||||||||    
T  5949047 actagtgtaacgtcccgtgccaagcacgggatacattttatttaaattttttttaacagggtttacacataaataagtttttt 5948965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33026238 - 33026288
Alignment:
Q  1 actactctattgatgaataaattgatgaatgataaaagatttacatttaat 51  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  33026238 actactccattgatgaataaattgatgaatgataaaagacttacatttaat 33026288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 36315469 - 36315551
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacgga-atacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| || |||||||||||||||| || |||||||||||||||  | ||||||  |||||||||||||||||||||||||    
T  36315469 actagtgtaatgccccgtgccaagcacagagatacattttatttaattttttttaacggggtttacacataaataagtttttt 36315551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 36329678 - 36329760
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacgga-atacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| || |||||||||||||||| || |||||||||||||||  | ||||||  |||||||||||||||||||||||||    
T  36329678 actagtgtaatgccccgtgccaagcacagagatacattttatttaattttttttaacggggtttacacataaataagtttttt 36329760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 7512643 - 7512583
Alignment:
Q  132 tataaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  7512643 tatataactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaa 7512583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 4946373 - 4946327
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaa 184  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  4946373 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaa 4946327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 6248256 - 6248311
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    |||||||| || |||||||||||||||||| |||||||||||||||| | ||||||    
T  6248256 aactagtgtaatgccccgtgccaagcacgggatacattttatttaaatttttttaa 6248311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 9765473 - 9765527
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| | ||||||    
T  9765473 actagtgtaacgccccgtgccaagcacgggatatattttatttaaatttttttaa 9765527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 27074230 - 27074176
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| |||| |||||||||||||||| |||||||||||||||| | ||||||    
T  27074230 actagtgtaacgtcccgtgccaagcacgggatacattttatttaaatttttttaa 27074176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 27154321 - 27154267
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| |||| |||||||||||||||| |||||||||||||||| | ||||||    
T  27154321 actagtgtaacgtcccgtgccaagcacgggatacattttatttaaatttttttaa 27154267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 34807115 - 34807058
Alignment:
Q  169 tacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||||||||||    |||| || ||||||||||||||||||||||||||||||    
T  34807115 tacattttatttaaaaaaaattaacagagtttacacataaataagttttttagatatt 34807058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 1593776 - 1593865
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1593776 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaaaagggtttacacataaatacgttttttagatatt 1593865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 39560384 - 39560472
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39560384 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaataagttttttagatatt 39560472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 40835898 - 40835810
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  40835898 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaatacgttttttagatatt 40835810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 22493707 - 22493797
Alignment:
Q  136 aaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  22493707 aaactagtgtaacgccccgtgctaagcacgggatacattttatttaaatttttttaacagggtttacacataaataagttttttagatatt 22493797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 16485802 - 16485715
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  16485802 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatattttaacagggtttacacat-aataagttttttagatatt 16485715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 5807563 - 5807651
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||| | |||||| |||||||||||||| ||||||||||||||||||    
T  5807563 actagtgtaacgccccgtgccaagcacgagatacattttatttaaatttttttaacagggtttacacatagataagttttttagatatt 5807651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 39005739 - 39005653
Alignment:
Q  140 tagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||| |||||||||||||||| |||| |||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||    
T  39005739 tagtgtaacgccccgtgccaagtacgggatacattttatttaaatttttttaacagggtttacacataaataagttttttaaatatt 39005653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 16483357 - 16483275
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaa-atgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||  | ||||||   ||||||||||||||||||||||||    
T  16483357 actagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaactaggtttacacataaataagtttttt 16483275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 23104627 - 23104677
Alignment:
Q  134 taaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaa 184  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  23104627 taaaactagtgtaacgccccgtgccaagcacgggatacattttatttaaaa 23104677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 28907544 - 28907590
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaa 184  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  28907544 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaa 28907590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 28943939 - 28943985
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaa 184  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  28943939 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaa 28943985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 25340154 - 25340110
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaa 182  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||    
T  25340154 actagtgtaacgccccgtgccaagcacgggatacattttatttaa 25340110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 38981716 - 38981775
Alignment:
Q  10 ttgatgaataaattgatgaatgataaaagatttacatttaatgaaccgaaatgaaattat 69  Q
    |||||||||||||||||| ||||||||||  ||||||||||| ||| ||||| |||||||    
T  38981716 ttgatgaataaattgatgtatgataaaaggcttacatttaataaactgaaataaaattat 38981775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 1209774 - 1209820
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaa 184  Q
    ||||||| |||| |||||||||||||||| |||||||||||||||||    
T  1209774 actagtgtaacgtcccgtgccaagcacgggatacattttatttaaaa 1209820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 22383860 - 22383946
Alignment:
Q  132 tataaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttt 218  Q
    ||||| ||||||| |||  |||||||||||||||| || ||||||||||||||    ||||  |||||||||||||| |||||||||    
T  22383860 tataatactagtgtaacttcccgtgccaagcacgggattcattttatttaaaaaaaattaacggggtttacacataattaagttttt 22383946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 36786619 - 36786673
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| | ||||||    
T  36786619 actagtgtaacgccccgtgccaagcacgggatatattttatttaaatttttttaa 36786673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 14459067 - 14459020
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaat 185  Q
    |||||||  ||||| |||||||||||||| ||||||||||||||||||    
T  14459067 actagtgttacgcctcgtgccaagcacgggatacattttatttaaaat 14459020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 22718527 - 22718581
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| |||||| ||||||||| |||| |||||||||||||||| | ||||||    
T  22718527 actagtgtaacgcctcgtgccaagtacgggatacattttatttaaatttttttaa 22718581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 45542275 - 45542187
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45542275 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaatagggtttacacataaataagttttttagatatt 45542187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 21327400 - 21327489
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  21327400 aactagtataacgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaatacgttttttagatatt 21327489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 41400342 - 41400431
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  41400342 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaacagggtttacacataaataagttttttagatatt 41400431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 2028675 - 2028595
Alignment:
Q  146 aacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  2028675 aacgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaatacgttttttagatatt 2028595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 49009029 - 49008948
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49009029 actagtgtaatgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaataagtttttt 49008948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 2844755 - 2844668
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||| || | ||||||||||||||||||||||||||||    
T  2844755 actagtgtaacgccccgtgccaagcacgggatacattttattt-aaattttttaacagagattacacataaataagttttttagatatt 2844668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 32518971 - 32519055
Alignment:
Q  136 aaactagtgaaacgccccgtgccaagcacggaatacattttatttaaa-atgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||  | |||||| ||||||||||||||||||||||||||    
T  32518971 aaactagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaacagggtttacacataaataagtttttt 32519055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 28640795 - 28640884
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||| | |||||| |||||||| | ||| ||||||||||||||||||    
T  28640795 aactagtgtaacgccccgtgccaagtacgggatacattttatttaaatttttttaacagggtttaaaaatagataagttttttagatatt 28640884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 18415396 - 18415313
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgt-tttaaaagggtttacacataaataagtttttt 219  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||    ||||| ||||||||||||||||||||||||||    
T  18415396 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaaaaaaatttaacagggtttacacataaataagtttttt 18415313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 24780723 - 24780642
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||| | |||||| ||||||||  ||||||||||||||||    
T  24780723 actagtgtaacgccccgtgccaagcacaggatacattttatttaaatttttttaacagggtttatgcataaataagtttttt 24780642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 8111547 - 8111465
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaa-atgttttaaaagggtttacacataaataagtttttt 219  Q
    |||||||| |||||||||||||||||| |  |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  8111547 aactagtgcaacgccccgtgccaagcatgagatacattttatttaaatatg-tttaacagggtttacacataaataagtttttt 8111465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 38297090 - 38297036
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  38297090 actagtgtaacgccccgtgccaagcacgggatacattttatttaaattgttttaa 38297036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 38980336 - 38980416
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| ||||||||||| ||||||||| ||| ||||||||| |||| |||||| || |||||| ||||||||||||||||    
T  38980336 actagtgtaacgccccgtgtcaagcacgggatatattttattt-aaattttttaacagagtttacccataaataagtttttt 38980416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 16661991 - 16662037
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaa 184  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  16661991 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaa 16662037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 42438865 - 42438819
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaa 184  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  42438865 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaa 42438819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 13499721 - 13499675
Alignment:
Q  146 aacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||| ||||||||||||||| |||||||||||||||| | ||||||    
T  13499721 aacgctccgtgccaagcacgggatacattttatttaaatttttttaa 13499675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 24452288 - 24452342
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| |||| |||||||||||||||| ||| |||||||||||| | ||||||    
T  24452288 actagtgtaacgtcccgtgccaagcacgggatatattttatttaaatttttttaa 24452342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 32052947 - 32052903
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaa 182  Q
    ||||||| |||| |||||| ||||||||| |||||||||||||||    
T  32052947 actagtgtaacgtcccgtgtcaagcacgggatacattttatttaa 32052903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 9225332 - 9225234
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatattcttcgacat 235  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |||||    
T  9225332 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaaatattttaacagggtttacacataaataagttttttagatattatttgacat 9225234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 39617123 - 39617211
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||| ||| ||||||||||||||||||    
T  39617123 actagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaacagggtttacatatagataagttttttagatatt 39617211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 18380576 - 18380660
Alignment:
Q  136 aaactagtgaaacgccccgtgccaagcacggaatacattttatttaaa-atgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||  | |||||| ||||||||||||||||||||||||||    
T  18380576 aaactagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaacagggtttacacataaataagtttttt 18380660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 12497989 - 12498076
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| ||||||||||||||||||||| ||||||||||| |||||   ||||| | |||||||||||||||||||||||||||||||    
T  12497989 actagtgtaacgccccgtgccaagcacgggatacattttatataaaacaatttaaca-ggtttacacataaataagttttttagatatt 12498076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 6421765 - 6421683
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaa-atgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||  | |||||| || |||||||||||||||||||||||    
T  6421765 actagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaacagagtttacacataaataagtttttt 6421683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 40560604 - 40560557
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaa 184  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||    
T  40560604 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaaa 40560557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 13276687 - 13276741
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  13276687 actagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaa 13276741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 33444465 - 33444411
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||| | ||||||    
T  33444465 actagtgtaacgccccgtgccaagtacggaatacattttatttaaatttttttaa 33444411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 16431359 - 16431315
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaa 182  Q
    ||||||| |||| |||||||||||||||| |||||||||||||||    
T  16431359 actagtgtaacgtcccgtgccaagcacgggatacattttatttaa 16431315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 36892605 - 36892660
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    |||| ||| ||||||||||||||| ||||| |||||||||||||||| | ||||||    
T  36892605 aactggtgtaacgccccgtgccaaacacgggatacattttatttaaatttttttaa 36892660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 22517025 - 22516980
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaa 184  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  22517025 actagtgtaacgccc-gtgccaagcacgggatacattttatttaaaa 22516980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 22403226 - 22403145
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22403226 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaataagtttttt 22403145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 4061611 - 4061700
Alignment:
Q  136 aaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  4061611 aaactagtgtaacgccccgtgccaagcacgggatacattttatttaaaatattttaacagggtttacacat-aataagttttttagatatt 4061700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 37970034 - 37969945
Alignment:
Q  136 aaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  37970034 aaactagtgtaacgccccgtgccaagcacgggatacattttatttaaaatattttaacagggtttacacat-aataagttttttagatatt 37969945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 33950909 - 33950999
Alignment:
Q  136 aaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||| |||||| |||| ||||||||  ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||    
T  33950909 aaactagtgtaacgcctcgtgtcaagcacgagatacattttatttaaaatgttttaacaaggtttgcacataaataagttttttagatatt 33950999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 3335179 - 3335260
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  3335179 actagtgtaacgcctcgtgccaagcacgggatacattttatttaaacttttttaacagggtttacacataaataagtttttt 3335260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 28413298 - 28413378
Alignment:
Q  146 aacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||||||||| ||||  |||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  28413298 aacgccccgtgccaaacacgagatacattttatttaaaatattttaacagggtttacacataaataagttttttaaatatt 28413378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 45278389 - 45278506
Alignment:
Q  21 attgatgaatgataaaagatttacatttaatgaaccgaaatgaaattatacaaaatttgcttcttaatttaattttaagtaacattttaatcccaattta 120  Q
    ||||||||||||||||| | ||||||||||| |||   ||| |||||| |||||||||| ||||||| ||||||||| |||||| |||| | || |||||    
T  45278389 attgatgaatgataaaaaacttacatttaataaactacaataaaattagacaaaatttgtttcttaacttaattttaggtaacaatttagttccgattta 45278488  T
Q  121 gtccgttatattataaaa 138  Q
    |||| |||| ||||||||    
T  45278489 gtcctttatgttataaaa 45278506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 35347752 - 35347807
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  35347752 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaa 35347807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 10118748 - 10118802
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  10118748 actagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaa 10118802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 43847994 - 43847939
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||||| | ||||||    
T  43847994 aactagtgtaacgccccgtgtcaagcacgggatacattttatttaaatttttttaa 43847939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 23305541 - 23305457
Alignment:
Q  132 tataaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagtttt 217  Q
    ||||| ||||||| |||  |||||||||||||||| || |||||||||| |||| |||| || |||||||||||||| || |||||    
T  23305541 tataatactagtgtaacttcccgtgccaagcacgggattcattttattt-aaatttttttaaggggtttacacataattaggtttt 23305457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 54613346 - 54613291
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    |||||||| ||||||||||| |||||| || |||||||||||||||| | ||||||    
T  54613346 aactagtgtaacgccccgtgtcaagcatgggatacattttatttaaatttttttaa 54613291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 26702554 - 26702600
Alignment:
Q  146 aacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    |||| |||||||||||||||| |||||||||||||||| | ||||||    
T  26702554 aacgtcccgtgccaagcacgggatacattttatttaaatttttttaa 26702600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 38187506 - 38187550
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaa 182  Q
    ||||||| |||| |||||| ||||||||| |||||||||||||||    
T  38187506 actagtgtaacgtcccgtgtcaagcacgggatacattttatttaa 38187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 46809899 - 46809808
Alignment:
Q  135 aaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||| |||||||| ||||| ||||||||||||||||||    
T  46809899 aaaactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaacagggtttatacatagataagttttttagatatt 46809808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 6617886 - 6617799
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||    
T  6617886 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatattttatcagggtttacacat-aataagttttttagatatt 6617799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 21949071 - 21949153
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||  |||||| ||| ||||||||||||||||||||||    
T  21949071 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaaaaattttaacaggatttacacataaataagtttttt 21949153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 31078707 - 31078795
Alignment:
Q  131 ttataaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||| |||||||| ||||||||||||||| ||||  |||||||||||||| ||| |||||| | ||||||||||||||||||||||||    
T  31078707 ttatataactagtgtaacgccccgtgccaaccacgagatacattttatttataattttttaacaaggtttacacataaataagtttttt 31078795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 34637713 - 34637795
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaa-atgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| |||| |||||||||||||||| ||||||||||||||||  | |||||| ||||||||||||||||||||||||||    
T  34637713 actagtgtaacgtcccgtgccaagcacgggatacattttatttaaattttttttaacagggtttacacataaataagtttttt 34637795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 42054486 - 42054404
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaa-atgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||  | ||||||  |||||||||||||||||||||||||    
T  42054486 actagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaactgggtttacacataaataagtttttt 42054404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 9174105 - 9174193
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    |||||||||||||||||||||||   |||| ||| |||||||||||| | |||||| |||||||| ||||||||||||||||||| ||||    
T  9174105 aactagtgaaacgccccgtgccatatacgggatatattttatttaaatt-ttttaacagggtttatacataaataagttttttaggtatt 9174193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 44042485 - 44042543
Alignment:
Q  134 taaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  44042485 taaaactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaa 44042543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 18781563 - 18781617
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  18781563 actagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaa 18781617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 35116534 - 35116480
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||||| | ||||||    
T  35116534 actagtgtaacgccccgtgtcaagcacgggatacattttatttaaatttttttaa 35116480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 35508040 - 35507998
Alignment:
Q  140 tagtgaaacgccccgtgccaagcacggaatacattttatttaa 182  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  35508040 tagtgtaacgccccgtgccaagcacgggatacattttatttaa 35507998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 37313028 - 37313082
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||||| | ||||||    
T  37313028 actagtgtaacgccccgtgtcaagcacgggatacattttatttaaatttttttaa 37313082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 15152889 - 15152969
Alignment:
Q  146 aacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||||||||||||||| |||||||||||||||| | |||||| | |||||||||||||||||||||||||||||||    
T  15152889 aacgccccgtgccaagcacgggatacattttatttaaatttttttaacatggtttacacataaataagttttttagatatt 15152969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 18898118 - 18898200
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaa-tgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  18898118 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatttttttaacagggtttacacataaataagtttttt 18898200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 22515394 - 22515302
Alignment:
Q  134 taaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||||| ||| ||||||||   |||||  |||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||||    
T  22515394 taaaactagtgcaaccccccgtgcttggcacgtgatacattttatttaaatttttttaacagggtttatacataaataagttttttagatatt 22515302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 4268559 - 4268612
Alignment:
Q  131 ttataaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaa 184  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  4268559 ttataatactagtgtaacgccccgtgccaagcacgggatacattttatttaaaa 4268612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 9699929 - 9699984
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  9699929 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaa 9699984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 1424561 - 1424608
Alignment:
Q  136 aaactagtgaaacgccccgtgccaagcacggaatacattttatttaaa 183  Q
    |||||| || ||||||||||||||||||||| ||| ||||||||||||    
T  1424561 aaactaatgtaacgccccgtgccaagcacgggatatattttatttaaa 1424608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 14183164 - 14183110
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| |||||| ||||||||| |||| |||||||||||||||| | ||||||    
T  14183164 actagtgtaacgcctcgtgccaagtacgggatacattttatttaaatttttttaa 14183110  T

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Target: scaffold0088 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 26551 - 26463
Alignment:
Q  131 ttataaaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||||||| ||||| ||||||    
T  26551 ttattaaactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaacagggtttacacatgaataaatttttt 26463  T

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Target: scaffold0009 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 193875 - 193957
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaa-atgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||  | |||||| ||||||||||||||||||||||||||    
T  193875 actagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaacagggtttacacataaataagtttttt 193957  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 40268625 - 40268530
Alignment:
Q  136 aaactagtgaaacgccccgtgccaagc-----acggaatacattttatttaaaatgttttaaaagggtttacacataaataagttttttagatatt 226  Q
    ||||||||| |||||||||||||||||     |||| ||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  40268625 aaactagtgtaacgccccgtgccaagccaagcacgggatatattttatttaaatttttttaacagggtttacacataaataagttttttagatatt 40268530  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 39118927 - 39118981
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  39118927 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaattttttaa 39118981  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 4647225 - 4647305
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaaaagggtttacacataaataagtttttt 219  Q
    ||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||||| || ||||||  |||||||||||||||    
T  4647225 actagtgtaacgccccgtgccaagcacgggatatatttta-ttaaaattttttaacagagtttaccaataaataagtttttt 4647305  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 12253591 - 12253646
Alignment:
Q  137 aactagtgaaacgccccgtgccaagcacggaatacattttatttaaaatgttttaa 192  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  12253591 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaa 12253646  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 42839915 - 42839959
Alignment:
Q  138 actagtgaaacgccccgtgccaagcacggaatacattttatttaa 182  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||    
T  42839915 actagtgtaacgccccgtgccaagcacgggatacattttatttaa 42839959  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 6909195 - 6909146
Alignment:
Q  136 aaactagtgaaacgccccgtgccaagcacggaatacattttatttaaaat 185  Q
    ||||||||| ||||||||||||||||||||  ||||||| ||||||||||    
T  6909195 aaactagtgtaacgccccgtgccaagcacgagatacattatatttaaaat 6909146  T

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