View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_95 (Length: 237)
Name: NF7607_low_95
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27453013 - 27453237
Alignment:
| Q |
1 |
tcctgtgaccaccaacccgcttcttgcggagaagcctcctgtgacgaccaatccaattctagacttctatcttgctaagaagctcgaagaggaaagtaag |
100 |
Q |
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| T |
27453013 |
tcctgtgaccaccaacccgcttcttgcggagaagcctcctgtgacgactaatccaattctagacttctatcttgctaagaagctcgaagcggaaagtaag |
27453112 |
T |
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| Q |
101 |
tttgtgtcttgtc-nnnnnnnnnnnngaagtttcaaccatgttaaaatatcctcaacnnnnnnnnnnnnnnatttgatcaaaacaatggacagaatattt |
199 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
27453113 |
tttgtgtcttgtctttttcttttttttaagtttcaaacatgttaaaatatcctcaactttttgttttttttatttaatcaaaacaatggacagaatattt |
27453212 |
T |
|
| Q |
200 |
taagcaagacataaagaacatagtg |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
27453213 |
taagcaagacataaagaacatagtg |
27453237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 20949853 - 20949962
Alignment:
| Q |
1 |
tcctgtgaccaccaacccgcttcttgcggagaagcctcctgtgacgaccaatccaattctagacttctatcttgctaagaagctcgaagaggaaagtaag |
100 |
Q |
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||||||||| ||||| |||||||| | ||||||||||| ||||||||||| || |||| ||||||||| ||||||||||| |||| |||||||||| |
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| T |
20949853 |
tcctgtgacggccaactcgcttctttctgagaagcctccagtgacgaccaacccggttctcaacttctatcatgctaagaagcaagaagtggaaagtaag |
20949952 |
T |
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| Q |
101 |
tttgtgtctt |
110 |
Q |
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|||||||||| |
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| T |
20949953 |
tttgtgtctt |
20949962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 20950824 - 20950933
Alignment:
| Q |
1 |
tcctgtgaccaccaacccgcttcttgcggagaagcctcctgtgacgaccaatccaattctagacttctatcttgctaagaagctcgaagaggaaagtaag |
100 |
Q |
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||||||||| ||||| |||||||| | ||||||||||| ||||||||||| || |||| ||||||||| ||||||||||| |||| |||||||||| |
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| T |
20950824 |
tcctgtgacggccaactcgcttctttctgagaagcctccagtgacgaccaacccggttctcaacttctatcatgctaagaagcaagaagtggaaagtaag |
20950923 |
T |
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| Q |
101 |
tttgtgtctt |
110 |
Q |
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|||||||||| |
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| T |
20950924 |
tttgtgtctt |
20950933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 20951176 - 20951227
Alignment:
| Q |
171 |
atttgatcaaaacaatggacagaatattttaagcaagacataaagaacatag |
222 |
Q |
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| T |
20951176 |
atttgatcaaaacaatggacagagtatttaaatcaagacatgaagaacatag |
20951227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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