View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7607_low_98 (Length: 229)
Name: NF7607_low_98
Description: NF7607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7607_low_98 |
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| [»] chr7 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 49012878 - 49013054
Alignment:
| Q |
51 |
attgaattagttcggttttaaaacctctatttataattgaggaagatacttttatcttagcatatatgccgaaaatcatggggaaggtgacgcataagaa |
150 |
Q |
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| T |
49012878 |
attgaattagttcggttttaaaacctctatttataattgaggaagatacttttatcttagcatat--gccgaaaatcatggggaaggtgacgcataagaa |
49012975 |
T |
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| Q |
151 |
tgagttgagatcctctcctatatttttgatgtataaatattcaattaatgtcacatattataaaaatgtgtatatttat |
229 |
Q |
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| T |
49012976 |
tgagttgagatcctctcctatatttttgatgtataaatattcaattaatgtcacatattataaaaatgtgtgtatttat |
49013054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 24536119 - 24536075
Alignment:
| Q |
168 |
ctatatttttgatgtataaatattcaattaatgtcacatattata |
212 |
Q |
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| T |
24536119 |
ctatagttttggtgtataaatattcaattaatgtcacatattata |
24536075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 19921648 - 19921689
Alignment:
| Q |
180 |
tgtataaatattcaattaatgtcacatattataaaaatgtgt |
221 |
Q |
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| T |
19921648 |
tgtataaatattcaattaatatcacatattatagaaatgtgt |
19921689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 46864369 - 46864417
Alignment:
| Q |
180 |
tgtataaatattcaattaatgtcacatattataaaaatgtgtatattta |
228 |
Q |
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| T |
46864369 |
tgtataaatatctaattaatgtcacatattctaaaaatatgtatattta |
46864417 |
T |
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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 3960803 - 3960856
Alignment:
| Q |
168 |
ctatatttttgatgtataaatattcaattaatgtcacatattataaaaatgtgt |
221 |
Q |
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| T |
3960803 |
ctatatttttggtgtataaatattcaattaatgtcacatattatagaaatgtgt |
3960856 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 18391881 - 18391927
Alignment:
| Q |
175 |
tttgatgtataaatattcaattaatgtcacatattataaaaatgtgt |
221 |
Q |
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| T |
18391881 |
tttggtgtatatatattcaattaatgtcacatattatagaaatgtgt |
18391927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 53005587 - 53005636
Alignment:
| Q |
172 |
atttttgatgtataaatattcaattaatgtcacatattataaaaatgtgt |
221 |
Q |
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| T |
53005587 |
attttggatgcataaatattcaattaatatcatatattttaaaaatgtgt |
53005636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 27580698 - 27580759
Alignment:
| Q |
168 |
ctatatttttgatgtataaatattcaattaatgtcacatattataaaaatgtgtatatttat |
229 |
Q |
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| T |
27580698 |
ctataattttggtgtataaatgtccaaataatgtcacatattctaaaaatatgtgtatttat |
27580759 |
T |
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