View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_high_20 (Length: 267)
Name: NF7609_high_20
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 33115488 - 33115382
Alignment:
| Q |
70 |
aaacaaaaatcatgatctaatataatagttttcataccttagtgaaggccaagttgatgagataggagaggaattgtcccccagtgatgagaaaactgtt |
169 |
Q |
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| T |
33115488 |
aaacaaaaatcatgatctaatataatagttttcataccttagtgaaggccaagttgatgagataggagagaaattgtcccccagtgatgagaaaaccgtt |
33115389 |
T |
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| Q |
170 |
gagactt |
176 |
Q |
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||||||| |
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| T |
33115388 |
gagactt |
33115382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 33114957 - 33114876
Alignment:
| Q |
174 |
cttacaagggcacctctcactttagcaggcgaagcttctgaaatgtacagtggagaagccattgaagccattccaacaccaa |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33114957 |
cttacaagggcacctctcactttagcaggcgaagcttctgaaatgtacagtggagaagccattgaagccattccaacaccaa |
33114876 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 21493229 - 21493379
Alignment:
| Q |
105 |
accttagtgaaggccaagttgatgagataggagaggaattgtcccccagtgatgagaaaactgttgagacttacaagggcacctctcactttagcaggcg |
204 |
Q |
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| T |
21493229 |
accttagtaaaggccaagttgatgagataggaaaggaactgtccaccagtgatgagaaaactgttgagactaacaagagcacctctaactcgagttggtg |
21493328 |
T |
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| Q |
205 |
aagcttctgaaatgtacagtggagaagccattgaagccattccaacaccaa |
255 |
Q |
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| T |
21493329 |
aagcctcagagatgtacaaaggagatgccattgaagccatcccgacaccaa |
21493379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 255
Target Start/End: Original strand, 21560409 - 21560553
Alignment:
| Q |
111 |
gtgaaggccaagttgatgagataggagaggaattgtcccccagtgatgagaaaactgttgagacttacaagggcacctctcactttagcaggcgaagctt |
210 |
Q |
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||||| ||||||||||| | |||||| ||||||||||| |||||||||||||| | |||||||| ||||| || ||||| || ||| || ||||||| |
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| T |
21560409 |
gtgaatgccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagactaacaagtgctcctctaaccctagttggtgaagctt |
21560508 |
T |
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| Q |
211 |
ctgaaatgtacagtggagaagccattgaagccattccaacaccaa |
255 |
Q |
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|||| || || | ||||||||||||||||||||||||||||||| |
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| T |
21560509 |
ctgagatatataaaggagaagccattgaagccattccaacaccaa |
21560553 |
T |
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