View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_high_30 (Length: 239)
Name: NF7609_high_30
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_high_30 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 53214732 - 53214511
Alignment:
| Q |
18 |
aaaggttgttgacaatgccacccatcagccaaacctcggtggcaataatgttgtccatgttctcgggatgtttcaaataatataatccataaacaatatt |
117 |
Q |
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| T |
53214732 |
aaaggttgttgacaatgccacccatcagccaaacctcggtggcaataatgttgtccatgttctcgggatgtttcaaataatataatccataaacaatatt |
53214633 |
T |
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| Q |
118 |
ttagtggttcagctcattacatctaaaacatgtcaagaatgtgcaaaaacttctgcattgagggttttgtcatattttggattatttaatctgaaccagt |
217 |
Q |
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| T |
53214632 |
ttagtggttcagatcattacatctgaaacatgtcaagaatgtgcaaaaacttctgcattgagggttttgtcatattttggattatttaatctgaatcagt |
53214533 |
T |
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| Q |
218 |
caaatacaagatttttctgtgg |
239 |
Q |
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| T |
53214532 |
caaatacaagatttttctgtgg |
53214511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 29152347 - 29152291
Alignment:
| Q |
183 |
tttgtcatattttggattatttaatctgaaccagtcaaatacaagatttttctgtgg |
239 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| ||| ||||| ||||| |
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| T |
29152347 |
tttgtcatatttcatattatttaatatgaaccagtcaaatataaggtttttttgtgg |
29152291 |
T |
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