View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_high_6 (Length: 493)
Name: NF7609_high_6
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 106 - 485
Target Start/End: Original strand, 55179741 - 55180127
Alignment:
| Q |
106 |
tataattgtaaagtaaaaagttgagnnnnnnngtacaatatatagactttgttggagtgtcaaatgctgctgaaaaatataattagaaatacaatctttt |
205 |
Q |
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| T |
55179741 |
tatacttgtaaagtaaaaagttgagaaaaaa-gtacaatatatagacttttttggagtgtcaaatgctgctgaaaaatataattagaaatacaatctttt |
55179839 |
T |
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| Q |
206 |
ttgtgaatgcaaataaaaatatatttattactgaaattgaatattttttattacaatgaaagtgagagnnnnnnnngcacgtacagatgctaatgcgtgt |
305 |
Q |
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| T |
55179840 |
ttgtgaatgcaaataaaaatatatttattactgaaattgaatattttttattacaatgaaagtgagagaaaaaaaagcacgtacagatgctaatgcgtgt |
55179939 |
T |
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| Q |
306 |
tttctatttaggatcaattattgtgacaataaatcattagcatgcaattgcaattcaatatgcaggagcatgcagtaatgctcctttgattccaaattaa |
405 |
Q |
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| T |
55179940 |
tttctatttaggatcaattattgtgacaataaatcattagcatgcaattgcaattcaatatgcaggagcatgcagtaatgctcctttgattccaaattaa |
55180039 |
T |
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| Q |
406 |
tgagagatatgtccattcatttcttctttc------atattaatatgcaagacacttcatggattagtga--ttactttgatattctt |
485 |
Q |
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| T |
55180040 |
cgagagatatgtccattcatttcttctttcatattaatattaatatgcaagacacttcatggattagtgattttactttgatgttctt |
55180127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 55179612 - 55179707
Alignment:
| Q |
15 |
aagaacctcaacatccccactagctccttggttaataacctcaattccaacacataagcttaggctaaaagaagcgaaaacaaagataacatataa |
110 |
Q |
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| T |
55179612 |
aagaacctcaacatccccactagctccttggttaataacctcaattccaacacataagcttaggctaaaagaagcgaaaacaaagataacatataa |
55179707 |
T |
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