View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_high_9 (Length: 443)
Name: NF7609_high_9
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 184 - 424
Target Start/End: Complemental strand, 47333817 - 47333576
Alignment:
| Q |
184 |
ttctaatctcaattacagaagaatacaaatttgtgactaaattaacnnnnnnnattacattataattataataaaaatcgtaagtacaccaatatcatga |
283 |
Q |
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| T |
47333817 |
ttctaatctcaattacagaagaatacaaatttgtgactaaattaacttttt---ttttattacact-ataataaaaatagtaagtacaccaatatcatga |
47333722 |
T |
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| Q |
284 |
ttgtcgtgattgcagtataaaagaaaaatatga--ttcattgaattgaatatcc---ataaacaaaacaggataattaaaattgatcatgaattcagcaa |
378 |
Q |
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| T |
47333721 |
ttgtcgtgattgcagtataaaagacaaatatgaaattcattgaattgaatatcccatataaacaaaacaggataattaaaattgatcatgaattcagcaa |
47333622 |
T |
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| Q |
379 |
ccccatctccaatttattacaaaaatcaacaataaaattacctaat |
424 |
Q |
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| T |
47333621 |
ccccatctccaatttattacaaaaatcaacaataaaattacctaat |
47333576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 47334063 - 47333908
Alignment:
| Q |
1 |
agatactaaacctgtgacgaatgaaaaaattgatgtgatnnnnnnntgatgaaaagttggctgctttcactgcagaccaacctcttgtctggtgggacgt |
100 |
Q |
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| T |
47334063 |
agatactaaacctgtgacgaatgaaaaaattgatgtgataaaaaaatgatgaaaagttggctgctttcactgcagaccaacctcttgtctggtgggacgt |
47333964 |
T |
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| Q |
101 |
ttcattttatttttgtcgcaattcttaacactattttataggaatcccttttaagaat |
158 |
Q |
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| T |
47333963 |
ttcattttatttttgtcacaattc-taacatta-tttataggaatcccttttaagaat |
47333908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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