View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_low_10 (Length: 432)
Name: NF7609_low_10
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 30128104 - 30128500
Alignment:
| Q |
19 |
cactccgactttaaggatacatgtttaatggaatgctggggccatttggcaagggaggttgcgtatccatactttagaggataccttgtttcaaattatc |
118 |
Q |
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| T |
30128104 |
cactccgactttaaggatacatgtttaatggaatgatggggccatttggcaagggaggttgcgtatccatactagagaggataccttgtttcaaattatc |
30128203 |
T |
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| Q |
119 |
aatattgcaaaaaatagagaacaggggtgaaggaaagttagattttttgagtgaaaagaacacaaaataaagtatatagtgatgaaaattttgtgctggg |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30128204 |
aatattgcaaaaaatagagaacatgggtgaaggaaagttagattttttgagtgaaaagaacacaaaataaagtatatagtgatgaaaattttgtgctggg |
30128303 |
T |
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| Q |
219 |
atcccgaatattgtctcttgaggtagtgtgtgccccattatccctcaaatgtctgcgcttcttctgttgtttgctccagattctgttctggtttttctta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30128304 |
atcccgaatattgtctcttgaggtagtgtgtgccccattatccctcaaatgtctgcgcttcttctgttgtttgctccagattctgttctggtttttctta |
30128403 |
T |
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| Q |
319 |
gtcattcgatcgagcaagattgtctgaggccttgtttctcaggttctgtttctggtggttgttttgctgttgtactgtcttgttttgtggccttcac |
415 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30128404 |
gtcattcgaccgagcaagattgtctgaggccttgtttctcaggttctgtttctggtggttgttttgctgttgtactgtcttgttttgtggccttcac |
30128500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 36288612 - 36288659
Alignment:
| Q |
129 |
aaaatagagaacaggggtgaaggaaagttagattttttgagtgaaaag |
176 |
Q |
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||||||||||| ||||||||||||||||| || |||| |||||||||| |
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| T |
36288612 |
aaaatagagaaaaggggtgaaggaaagtttgaattttagagtgaaaag |
36288659 |
T |
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