View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_low_14 (Length: 334)
Name: NF7609_low_14
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 121 - 322
Target Start/End: Complemental strand, 26798958 - 26798754
Alignment:
| Q |
121 |
gaaagtggaaacaacaataggttggagtttattgcagcatattagacggttgtttgatatgaattggaaggtccaaatttgtcattcgtacatagaacct |
220 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26798958 |
gaaagaggaaacaacaataggttggagtttattgcaacatattagacagttgttcgatatgaattggaaggtccaaatttgtgattcgtacatagaacca |
26798859 |
T |
|
| Q |
221 |
aatgcttgtgccgatgcacttgcaaatatatagcttgtgatggaggtttcacttgtttgttatataagcatt-ttatactc--attagtttgttattttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
26798858 |
aatgcttgtgccgatgcacttgcaaatatatagcttgtgatggaggtttcacttgtttgttatataagcattgtcctactcatattagtttgttattttt |
26798759 |
T |
|
| Q |
318 |
agtat |
322 |
Q |
| |
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||||| |
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| T |
26798758 |
agtat |
26798754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 26799541 - 26799425
Alignment:
| Q |
1 |
atggaagttatgggttgccgaacgaattcgttgtttggtgcggctgctacaacataatcggctcatgacgatttgtaggttgaactatatgtggatagga |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26799541 |
atggaagtaatgggttgccgaacgaattcgttgtttggtgcggctgctacaacataatcggctcatgacgatttgcaggttgaactatatgtggatagga |
26799442 |
T |
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| Q |
101 |
gatccttatcaaatgac |
117 |
Q |
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||||||||| ||||||| |
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| T |
26799441 |
gatccttatgaaatgac |
26799425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 32057512 - 32057424
Alignment:
| Q |
142 |
ttggagtttattgcagcatattagacggttgtttgatatgaattggaaggtccaaatttgtcattcgtacatagaacctaatgcttgtg |
230 |
Q |
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| T |
32057512 |
ttggagtttattgcaacatattagacgaccgttagatatgaattaggaggtccgaatttgtcattcgcacatagaagctaatgtttgtg |
32057424 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 13226895 - 13226807
Alignment:
| Q |
141 |
gttggagtttattgcagcatattagacggttgtttgatatgaattggaaggtccaaatttgtcattcgtacatagaacctaatgcttgt |
229 |
Q |
| |
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|||||||||||||| | |||||| |||||||||| |||||||||||| || || ||||| ||||||||||||||||| |||||||||| |
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| T |
13226895 |
gttggagtttattgtaacatatttgacggttgttggatatgaattgggagatctaaattcgtcattcgtacatagaagttaatgcttgt |
13226807 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 271
Target Start/End: Original strand, 33004281 - 33004429
Alignment:
| Q |
121 |
gaaagtggaaacaacaataggttggagtttattgcagcatattagacggttgtttgatatgaattggaaggtccaaatttgtcattcgtacatagaacct |
220 |
Q |
| |
|
|||||||| || |||||| ||| ||||||||||| ||||||| ||||||||| || ||||||||| ||||||| |||||||||| |||| |||| | |
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| T |
33004281 |
gaaagtgggaatgacaatatgttaaagtttattgcaacatattaaacggttgttagacatgaattgggaggtccagatttgtcatttttacaaagaagtt |
33004380 |
T |
|
| Q |
221 |
aatgcttgtgccgatgcacttgcaaatatatagcttgtgatggaggtttca |
271 |
Q |
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|||| |||| |||||| ||||||| ||||||||||||| ||| |||||| |
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| T |
33004381 |
aatgtatgtgtcgatgctcttgcaa--atatagcttgtgacggatgtttca |
33004429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 5199360 - 5199471
Alignment:
| Q |
120 |
tgaaagtggaaacaacaataggttggagtttattgcagcatattagacggttgtttgatatgaattggaaggtccaaatttgtcattcgtacatagaacc |
219 |
Q |
| |
|
||||| ||||||| |||| | |||| ||||||||||| ||||||||||||||||| | |||||||| | |||| |||||||||||| |||| |||| | |
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| T |
5199360 |
tgaaaatggaaacgacaacatgttgaagtttattgcaacatattagacggttgttgggtatgaatttgggggtctgaatttgtcattcatacagagaagc |
5199459 |
T |
|
| Q |
220 |
taatgcttgtgc |
231 |
Q |
| |
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||||| |||||| |
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|
| T |
5199460 |
taatgtttgtgc |
5199471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 16240580 - 16240467
Alignment:
| Q |
136 |
aataggttggagtttattgcagcatattagacggttgtttgatatgaattggaaggtccaaatttgtcattcgtacatagaacctaatgcttgtgccgat |
235 |
Q |
| |
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|||| ||||||||||||||||||||||| ||| |||||| | | ||| ||||||| || |||||||||||||||||| || |||||| |||||| || |
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| T |
16240580 |
aatatgttggagtttattgcagcatattcgacagttgttgggtttgatttggaag-tctggatttgtcattcgtacataaaagctaatgtttgtgctgac |
16240482 |
T |
|
| Q |
236 |
gcacttgcaaatata |
250 |
Q |
| |
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|||||||||||||| |
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| T |
16240481 |
acacttgcaaatata |
16240467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 51253393 - 51253451
Alignment:
| Q |
134 |
acaataggttggagtttattgcagcatattagacggttgtttgatatgaattggaaggt |
192 |
Q |
| |
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||||||||||||||||||||||| ||| |||||| ||||| |||||||||||| |||| |
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| T |
51253393 |
acaataggttggagtttattgcaatataatagacgattgttcgatatgaattgggaggt |
51253451 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 1882016 - 1881946
Alignment:
| Q |
220 |
taatgcttgtgccgatgcacttgcaaatatatagcttgtgatggaggtttcacttgtttgttatataagcatt |
292 |
Q |
| |
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|||||||||||| || ||||||||||||||| |||||||||||||| ||||||| |||||||| |||||| |
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| T |
1882016 |
taatgcttgtgctgacgcacttgcaaatata--gcttgtgatggaggattcactttgatgttatatgagcatt |
1881946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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