View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_low_15 (Length: 325)
Name: NF7609_low_15
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 87 - 257
Target Start/End: Original strand, 38074239 - 38074409
Alignment:
| Q |
87 |
acaacaacctgatacaatttaaaacacaattgtctcatctagtttaacagataataccaatattattaatatatgtttggttttatttttaaaaggatta |
186 |
Q |
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| T |
38074239 |
acaacaacctgttacaatttaaaacacaattgtctcatctagtttaacagataataccaatattattaatatatgtttggttttatttttaaaaggatta |
38074338 |
T |
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| Q |
187 |
taattgattatagaggtgtttcattgattatggattataattgatttttagaggtgtatcattgtagaatt |
257 |
Q |
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| T |
38074339 |
taattgattacagaggtgtttcattgattatggattataattgatttttagaggtgtatcattgtagaatt |
38074409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 38074189 - 38074246
Alignment:
| Q |
7 |
aatccaccatccccctctgtcaccaaattgtctcactcataaaggcaacaataacaac |
64 |
Q |
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| T |
38074189 |
aatccaccatcccccactgtcaccaaattgtctcactcataaaggcaataacaacaac |
38074246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 6283377 - 6283334
Alignment:
| Q |
158 |
tatgtttggttttatttttaaaaggattataattgattatagag |
201 |
Q |
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| T |
6283377 |
tatgtttggttttatttttaaaataattaaaattgattatagag |
6283334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 35221939 - 35221989
Alignment:
| Q |
155 |
atatatgtttggttttatttttaaaaggattataattgattatagaggtgt |
205 |
Q |
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| T |
35221939 |
atatatgtttggtttcattcttaaaagggttaaaattgattattgaggtgt |
35221989 |
T |
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