View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7609_low_16 (Length: 319)

Name: NF7609_low_16
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7609_low_16
NF7609_low_16
[»] chr6 (8 HSPs)
chr6 (19-308)||(14821531-14821820)
chr6 (31-241)||(6427343-6427550)
chr6 (110-241)||(6395775-6395904)
chr6 (78-176)||(6410910-6411008)
chr6 (193-241)||(6417578-6417626)
chr6 (195-241)||(19633429-19633475)
chr6 (32-156)||(7132465-7132589)
chr6 (32-156)||(7135388-7135512)
[»] chr7 (3 HSPs)
chr7 (48-240)||(15091284-15091476)
chr7 (41-166)||(7978039-7978163)
chr7 (188-241)||(10616194-10616247)
[»] chr1 (1 HSPs)
chr1 (32-175)||(33161355-33161498)
[»] chr5 (8 HSPs)
chr5 (254-308)||(20477027-20477081)
chr5 (117-166)||(12846943-12846992)
chr5 (32-72)||(17205878-17205918)
chr5 (200-244)||(20477106-20477150)
chr5 (190-240)||(17206970-17207020)
chr5 (128-166)||(28660959-28660997)
chr5 (128-166)||(29022050-29022088)
chr5 (116-165)||(32268776-32268825)
[»] chr4 (5 HSPs)
chr4 (116-171)||(2460603-2460658)
chr4 (177-239)||(53759968-53760030)
chr4 (112-157)||(1488913-1488958)
chr4 (195-240)||(1547373-1547418)
chr4 (117-157)||(12121009-12121049)
[»] chr3 (1 HSPs)
chr3 (191-225)||(51763081-51763115)
[»] chr8 (1 HSPs)
chr8 (128-165)||(32152224-32152261)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 14821531 - 14821820
Alignment:
Q  19 gtagcggcaatacgagaagtcaagggaggtgaggttggtgaaccttctgaagagagaaaggaggaaagggcgtgttacctctttgatattaagtgaaaat 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  14821531 gtagtggcaatacgagaagtcaagggaggtgaggttggtgaaccttttgaagagagaaaagaggaaagggcgtgttgcctctttgatattaagtgaaaat 14821630  T
Q  119 cgaagacgattggtgatagagaggaactgcttggagacgagggagagacatttcaagctgttttcgtcattgttgttgataatgaatttgaagatagatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14821631 cgaagacgattggtgatagagaggaactgcttggagacgagggagagacatttcaagctgttttcgtcattgttgttgataatgaatttgaagatagatt 14821730  T
Q  219 cccaacaatcatcgggtaaatataaaataatttgctgtgaagaagattggagagaagaagttatcctcttccttttcattggcagtgaac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14821731 cccaacaatcatcgggtaaatataaaataatttgctgtgaagaagattggagagaagaagttatcctcttccttttcattggcagtgaac 14821820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 241
Target Start/End: Original strand, 6427343 - 6427550
Alignment:
Q  31 cgagaagtcaagggaggtgaggttggtgaaccttctgaagagagaaaggaggaaagggcgtgttacctctttgatattaagtgaaaatcgaagacgattg 130  Q
    ||||| ||| |||||||||||||  ||||||||| ||||||||  | ||||||||||||||| | ||||||||| | | ||||||| | |||||||||||    
T  6427343 cgagaggtcgagggaggtgaggtgtgtgaaccttttgaagagaagagggaggaaagggcgtgcttcctctttgagagtgagtgaaatttgaagacgattg 6427442  T
Q  131 gtgatagagaggaactgcttggagacgagggagagacatttcaagctgttttcgtcattgttgttgataatgaatttgaagatagattcccaacaatcat 230  Q
    ||||| |||||||||||||||||||||||||||||| |  ||||   ||||||||||   |||||||| | ||||  |||||   |||||||||| ||||    
T  6427443 gtgatggagaggaactgcttggagacgagggagagagaactcaa---gttttcgtcagccttgttgatgaggaatccgaagacccattcccaacactcat 6427539  T
Q  231 cgggtaaatat 241  Q
    | |||||||||    
T  6427540 caggtaaatat 6427550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 241
Target Start/End: Original strand, 6395775 - 6395904
Alignment:
Q  110 agtgaaaatcgaagacgattggtgatagagaggaactgcttggagacgagggagagacatttcaagctgttttcgtcattgttgttgataatgaatttga 209  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |  ||||   || ||||||||  |||||| ||| |||| |||    
T  6395775 agtgaaaatcgaagatgattggtgatggagaggaactgcttggagacgagggagagagacctcaa---gtattcgtcatccttgttgttaaggaatctga 6395871  T
Q  210 agatagattcccaacaatca-tcgggtaaatat 241  Q
    |||   |||||||||| ||| ||||||||||||    
T  6395872 agacgcattcccaacactcagtcgggtaaatat 6395904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 6410910 - 6411008
Alignment:
Q  78 ggaggaaagggcgtgttacctctttgatattaagtgaaaatcgaagacgattggtgatagagaggaactgcttggagacgagggagagacatttcaagc 176  Q
    ||||||||||||||||| | ||||||| |   ||||| |||  |||||||||||| || |||||||||||||||||||||||||||||| | |||||||    
T  6410910 ggaggaaagggcgtgtttcatctttgacacagagtgacaatttaagacgattggtaatggagaggaactgcttggagacgagggagagagaattcaagc 6411008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 6417578 - 6417626
Alignment:
Q  193 gttgataatgaatttgaagatagattcccaacaatcatcgggtaaatat 241  Q
    |||||| |||||||||||||||  ||||||||| |||||||||||||||    
T  6417578 gttgatgatgaatttgaagataagttcccaacactcatcgggtaaatat 6417626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 19633429 - 19633475
Alignment:
Q  195 tgataatgaatttgaagatagattcccaacaatcatcgggtaaatat 241  Q
    |||||| ||||| |||||||||||||||||| ||||| |||||||||    
T  19633429 tgataaggaattcgaagatagattcccaacactcatcaggtaaatat 19633475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 7132465 - 7132589
Alignment:
Q  32 gagaagtcaagggaggtgaggttggtgaaccttctgaagagagaaaggaggaaagggcgtgttacctctttgatattaagtgaaaatcgaagacgattgg 131  Q
    |||| |||||||||| ||||||||||||||||| ||| |||   |  ||||||||||| |||| | |||||||   | ||||| |||||| |||| | |     
T  7132465 gagaggtcaagggagttgaggttggtgaaccttttgaggaggcgaccgaggaaagggcctgttgcatctttgacgatgagtgagaatcgacgacggtcga 7132564  T
Q  132 tgatagagaggaactgcttggagac 156  Q
    |||| ||||||||||  ||||||||    
T  7132565 tgatggagaggaactctttggagac 7132589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 7135388 - 7135512
Alignment:
Q  32 gagaagtcaagggaggtgaggttggtgaaccttctgaagagagaaaggaggaaagggcgtgttacctctttgatattaagtgaaaatcgaagacgattgg 131  Q
    |||| |||||||||| ||||||||||||||||| ||| |||   |  ||||||||||| |||| | |||||||   | ||||| |||||| |||| | |     
T  7135388 gagaggtcaagggagttgaggttggtgaaccttttgaggaggcgaccgaggaaagggcctgttgcatctttgacgatgagtgagaatcgacgacggtcga 7135487  T
Q  132 tgatagagaggaactgcttggagac 156  Q
    |||| ||||||||||  ||||||||    
T  7135488 tgatggagaggaactctttggagac 7135512  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 15091476 - 15091284
Alignment:
Q  48 tgaggttggtgaaccttctgaagagagaaaggaggaaagggcgtgttacctctttgatattaagtgaaaatcgaagacgattggtgatagagaggaactg 147  Q
    |||||||||||||||||  |||||||  | |||||||||| ||||||  | ||||||   | || |||||| ||||||  |||||||| |||||||||||    
T  15091476 tgaggttggtgaacctttcgaagagaatagggaggaaaggacgtgttttcactttgactctgagagaaaatagaagactgttggtgatggagaggaactg 15091377  T
Q  148 cttggagacgagggagagacatttcaagctgttttcgtcattgttgttgataatgaatttgaagatagattcccaacaatcatcgggtaaata 240  Q
     |||||||||||||||||| | |||||||    || ||  |||| |||||| |||||| ||||||   |||||||||| ||||||||||||||    
T  15091376 tttggagacgagggagagagaattcaagcaagatttgttgttgtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaata 15091284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 7978039 - 7978163
Alignment:
Q  41 agggaggtgaggttggtgaaccttctgaagagagaaaggaggaaagggcgtgtt-acctctttgatattaagtgaaaatcgaagacgattggtgatagag 139  Q
    ||||||||||||||| ||||||||| ||||||   | ||||||||||||||||| | |||  | || || |||||||||| |||||| |||||||| |||    
T  7978039 agggaggtgaggttgatgaaccttcggaagaggctagggaggaaagggcgtgttgaactccat-atgttgagtgaaaatctaagacggttggtgatggag 7978137  T
Q  140 aggaactgcttggagacgagggagaga 166  Q
    || |||||| | ||||||| |||||||    
T  7978138 agaaactgcat-gagacgaaggagaga 7978163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 10616194 - 10616247
Alignment:
Q  188 ttgttgttgataatgaatttgaagatagattcccaacaatcatcgggtaaatat 241  Q
    ||||||||||  || |||||||||||| |||||||||| ||||| |||||||||    
T  10616194 ttgttgttgaatataaatttgaagatacattcccaacactcatcaggtaaatat 10616247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 33161355 - 33161498
Alignment:
Q  32 gagaagtcaagggaggtgaggttggtgaaccttctgaagagagaaaggaggaaagggcgtgttacctctttgatattaagtgaaaatcgaagacgattgg 131  Q
    |||| |||||||||||||||||||||||||||| | ||||||  | ||||||||||| |||||   | |||||   | ||||| |||||||||| ||| |    
T  33161355 gagaggtcaagggaggtgaggttggtgaaccttttcaagagacgagggaggaaagggtgtgttgagtttttgagggtgagtgagaatcgaagactattag 33161454  T
Q  132 tgatagagaggaactgcttggagacgagggagagacatttcaag 175  Q
    |||| ||||| ||||| |||||||||||||| ||| | ||||||    
T  33161455 tgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 20477081 - 20477027
Alignment:
Q  254 tgtgaagaagattggagagaagaagttatcctcttccttttcattggcagtgaac 308  Q
    ||||||||||||| ||||||||||| | || |||||||||||||||||| |||||    
T  20477081 tgtgaagaagatttgagagaagaagctgtcatcttccttttcattggcattgaac 20477027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 12846943 - 12846992
Alignment:
Q  117 atcgaagacgattggtgatagagaggaactgcttggagacgagggagaga 166  Q
    |||| ||||| |||||||| ||||||||||||||||| ||||||||||||    
T  12846943 atcggagacggttggtgatggagaggaactgcttggaaacgagggagaga 12846992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 17205878 - 17205918
Alignment:
Q  32 gagaagtcaagggaggtgaggttggtgaaccttctgaagag 72  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  17205878 gagaagtcaagggatgtgaggttggtgaaccttttgaagag 17205918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 20477150 - 20477106
Alignment:
Q  200 atgaatttgaagatagattcccaacaatcatcgggtaaatataaa 244  Q
    ||||||||||| |||||||||||||| || |||||||||||||||    
T  20477150 atgaatttgaaaatagattcccaacagtcgtcgggtaaatataaa 20477106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 17207020 - 17206970
Alignment:
Q  190 gttgttgataatgaatttgaagatagattcccaacaatcatcgggtaaata 240  Q
    ||||||||| ||||||||||||||||||| |||||| |||||  |||||||    
T  17207020 gttgttgatgatgaatttgaagatagatttccaacattcatctagtaaata 17206970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 28660997 - 28660959
Alignment:
Q  128 ttggtgatagagaggaactgcttggagacgagggagaga 166  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  28660997 ttggtgatagagaggaactgcttcgagacaagggagaga 28660959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 29022050 - 29022088
Alignment:
Q  128 ttggtgatagagaggaactgcttggagacgagggagaga 166  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  29022050 ttggagatagagagaaactgcttggagacgagggagaga 29022088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 32268776 - 32268825
Alignment:
Q  116 aatcgaagacgattggtgatagagaggaactgcttggagacgagggagag 165  Q
    ||||||||||| |||||||| ||||| ||||| |||||||||| ||||||    
T  32268776 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 2460603 - 2460658
Alignment:
Q  116 aatcgaagacgattggtgatagagaggaactgcttggagacgagggagagacattt 171  Q
    ||||| |||||||||||||| ||||||||||| |||||||| | ||||||| ||||    
T  2460603 aatcggagacgattggtgatggagaggaactgtttggagaccatggagagagattt 2460658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 53760030 - 53759968
Alignment:
Q  177 tgttttcgtcattgttgttgataatgaatttgaagatagattcccaacaatcatcgggtaaat 239  Q
    |||||| ||| ||||||||||| | || |||||||||||||||||| || ||||| |||||||    
T  53760030 tgtttttgtccttgttgttgatgacgagtttgaagatagattcccagcactcatcaggtaaat 53759968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 1488958 - 1488913
Alignment:
Q  112 tgaaaatcgaagacgattggtgatagagaggaactgcttggagacg 157  Q
    ||||||||||||| | |||||||| |||||||||||||| ||||||    
T  1488958 tgaaaatcgaagatggttggtgatggagaggaactgctttgagacg 1488913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 1547418 - 1547373
Alignment:
Q  195 tgataatgaatttgaagatagattcccaacaatcatcgggtaaata 240  Q
    |||| |||||||||||||||||||||||||| || || ||||||||    
T  1547418 tgatgatgaatttgaagatagattcccaacactcgtcaggtaaata 1547373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 12121049 - 12121009
Alignment:
Q  117 atcgaagacgattggtgatagagaggaactgcttggagacg 157  Q
    |||||||||| |||||||| |||||||||||||| ||||||    
T  12121049 atcgaagacggttggtgatggagaggaactgctttgagacg 12121009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 51763115 - 51763081
Alignment:
Q  191 ttgttgataatgaatttgaagatagattcccaaca 225  Q
    |||||||| ||||||||||||||||||||||||||    
T  51763115 ttgttgatgatgaatttgaagatagattcccaaca 51763081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 32152224 - 32152261
Alignment:
Q  128 ttggtgatagagaggaactgcttggagacgagggagag 165  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  32152224 ttggtgatggagaggaactgtttggagacgagggagag 32152261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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