View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_low_18 (Length: 304)
Name: NF7609_low_18
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 28836491 - 28836747
Alignment:
| Q |
15 |
tgataaaattaaagtggttgaaatattcatgtattcgaattctcaacattaacgatatagtcattgattgaatcattaaatcaaaagttgatctatcaat |
114 |
Q |
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| T |
28836491 |
tgatgaaattaaagtggctgaaa-attcatgtcttcgtattctcaacattaacgatatagtcattgattgaatcattaaatcaaaagttgatctatcaat |
28836589 |
T |
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| Q |
115 |
tgtaacaaatgaatagtgcaccaagacnnnnnnnnnnnnnnnnnnncaacgctacaccaaaatgacgaacaaaacaatgtaacactaagacggcgaagt- |
213 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
28836590 |
tgtaacaaatgaacagtgcaccaagacaaaaaaaaataaaaataaacaacgctacaccaaaatgacgaacaaaacaatgcaacactaagacgatgaagta |
28836689 |
T |
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| Q |
214 |
-----nnnnnnnncagcaaagaaaaattggatatgtgtagaaatcatttgtttgtatt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28836690 |
aaaaataaaaaaacagcaaagaaaaattggatatgtgtagaaatcatttgtttatatt |
28836747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 18695221 - 18695187
Alignment:
| Q |
11 |
aatatgataaaattaaagtggttgaaatattcatg |
45 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
18695221 |
aatatgataaaattaaagtggtcgaaatattcatg |
18695187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 3166520 - 3166492
Alignment:
| Q |
11 |
aatatgataaaattaaagtggttgaaata |
39 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3166520 |
aatatgataaaattaaagtggttgaaata |
3166492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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