View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_low_2 (Length: 734)
Name: NF7609_low_2
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 28837515 - 28837054
Alignment:
| Q |
18 |
acacaaaacgtcaggcgcaaatagacaccttcaacggaacctgtctgtgctagacactctccaaaaccacatccaaggtatgac---------gagtgag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||| ||||||| |
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| T |
28837515 |
acacaaaacgtcaggcgcaaatagacaccttcaacggaacttgtttgtgccagacactctccaaaaccgcatccaaggtatgatccttctgatgagtgag |
28837416 |
T |
|
| Q |
109 |
caactagtagataccacgaacaatgtaaccatctcctcgattggaaagccacttccattcattcgaattattaacatgtaaccggattattgttttcgaa |
208 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || || |
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| T |
28837415 |
caactagtagacaccacgaacaatgtaaccatctcctcgattgaaaagccacttccattcattcgaattattaacctgtaaccggattattgttgtcaaa |
28837316 |
T |
|
| Q |
209 |
ttataaattatgaatgatgatgtattgttgttaaattatgagcgagttaattgttttnnnnnnnnttagtagtttttaaattgtttgtgtgttgagtgtg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28837315 |
ttataaattatgaatgatgatgtattgttgttaaattatgagcgagttaattgtttttaaaaaaattagtagtttttaaattgtttgtgtgttgagtgtg |
28837216 |
T |
|
| Q |
309 |
tctaggaaaaattgttaaattatgaatgtaaccatctttatgtgttctccattctacgtttgcatcctaattcattcaaccgattcttaactcttgatgc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28837215 |
tctaggaaaaattgttaaattatgaatgtaaccatctttctgtgttctccattctacgtttgcatcctaattcattcaatcgattcttaactcttgatgc |
28837116 |
T |
|
| Q |
409 |
tagcaaccgattcgtaactctctatgtaagcatttctagcaattcaagacgcttgtgagcaa |
470 |
Q |
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| T |
28837115 |
tagcaaccgattcgtaactctcgatgtaagcatttctagcaattcaagacgcttgtgagcaa |
28837054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 497 - 727
Target Start/End: Complemental strand, 28837013 - 28836783
Alignment:
| Q |
497 |
aagtttaaaacccatgtgattggtaagttttcttcgggatgaccttgggctgataggtacacaataagttgtagcccaatatcatattttaagagggtaa |
596 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |
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| T |
28837013 |
aagtttaaaacccatatgattggtaagttttcttcggtttgaccttgggctgataggtacacaataagttgtagcccaatataatatttttagaaggtaa |
28836914 |
T |
|
| Q |
597 |
atgcttttcccaccttataaaatctctcacgtaccttatgcagttcgaattacataatcttaatatcatattcaccctttaaggctaagaaatgtggaca |
696 |
Q |
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| T |
28836913 |
atgcttttcccaccttataaaatctctcacgtgccctatgcagttcggattacagaatcttaatatcgtattcaccctttaaggataagcaatgtggaca |
28836814 |
T |
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| Q |
697 |
aaaaagaaaatcaagtcttagtgatgtccat |
727 |
Q |
| |
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|||||||||| |||||||||| |||| |||| |
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| T |
28836813 |
aaaaagaaaagcaagtcttagcgatgcccat |
28836783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 8340579 - 8340751
Alignment:
| Q |
26 |
cgtcaggcgcaaatagacaccttcaacggaacctgtctgtgctagacactctccaaaaccacatccaaggtatgac---------gagtgagcaactagt |
116 |
Q |
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|||||| | ||||| ||||||||||| ||||| ||| ||| | |||||||||||||||| |||||||||||||| || ||||||||| || |
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| T |
8340579 |
cgtcagtcacaaattgacaccttcaatggaacatgtttgtaccggacactctccaaaaccgcatccaaggtatgatcctcatgatgaatgagcaactggt |
8340678 |
T |
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| Q |
117 |
agataccacgaacaatgtaaccatctcctcgattggaaagccacttccattcattcgaattattaacatgtaa |
189 |
Q |
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||| || | ||||| |||||||||||||| |||||| ||||||||||||||||| | |||||||||| ||||| |
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| T |
8340679 |
agacacaaggaacagtgtaaccatctccttgattgggaagccacttccattcatccaaattattaacctgtaa |
8340751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 3545701 - 3545654
Alignment:
| Q |
214 |
aattatgaatgatgatgtattgttgttaaattatgagcgagttaattg |
261 |
Q |
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||||||||||||| || ||||||||| ||||||||||||||||||||| |
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| T |
3545701 |
aattatgaatgataatatattgttgtcaaattatgagcgagttaattg |
3545654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 6600148 - 6600107
Alignment:
| Q |
221 |
aatgatgatgtattgttgttaaattatgagcgagttaattgt |
262 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||| |
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| T |
6600148 |
aatggtgatgtattgttgttaaattatgagcaagttaattgt |
6600107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 6675601 - 6675560
Alignment:
| Q |
221 |
aatgatgatgtattgttgttaaattatgagcgagttaattgt |
262 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| |
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| T |
6675601 |
aatggtgatgtattgttgttaaattatgagcaagttaattgt |
6675560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 11362756 - 11362711
Alignment:
| Q |
212 |
taaattatgaatgatgatgtattgttgttaaattatgagcgagttaatt |
260 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
11362756 |
taaattatgaatgatgatgtat---tgttaaattatgagcgacttaatt |
11362711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 12805798 - 12805847
Alignment:
| Q |
214 |
aattatgaatgatgatgtattgttgttaaattatgagcgagttaattgtt |
263 |
Q |
| |
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||||||||| |||| || ||||||||| |||||||||||| ||||||||| |
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| T |
12805798 |
aattatgaacgatgttggattgttgttgaattatgagcgacttaattgtt |
12805847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 3359616 - 3359665
Alignment:
| Q |
215 |
attatgaatgatgatgtattgttgttaaattatgagcgagttaattgttt |
264 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
3359616 |
attatgaatgatgatgtattgttgttgaattatgagcgatttaattgttt |
3359665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 13546972 - 13546904
Alignment:
| Q |
102 |
gagtgagcaactagtagataccacgaacaatgtaaccatctcctcgattggaaagccacttccattcat |
170 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||| ||| |||||| ||||||||||||||||| |
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| T |
13546972 |
gagtgagcaactgataggcaccacgaacaatgtaaccagtaccttgattgggaagccacttccattcat |
13546904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 19636623 - 19636557
Alignment:
| Q |
102 |
gagtgagcaactagtagataccacgaacaatgtaaccatctcctcgattggaaagccacttccattc |
168 |
Q |
| |
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||||||||||||| |||| |||| ||||| ||||||| || ||| |||||| ||||||||||||||| |
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| T |
19636623 |
gagtgagcaactaatagacaccatgaacagtgtaaccttcgccttgattgggaagccacttccattc |
19636557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 26487667 - 26487735
Alignment:
| Q |
102 |
gagtgagcaactagtagataccacgaacaatgtaaccatctcctcgattggaaagccacttccattcat |
170 |
Q |
| |
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||||||||||||| ||| |||||||| | |||||||||| ||| |||||| || |||||||||||||| |
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| T |
26487667 |
gagtgagcaactaataggcaccacgaagagtgtaaccatcaccttgattgggaatccacttccattcat |
26487735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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