View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_low_31 (Length: 240)
Name: NF7609_low_31
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 55776452 - 55776241
Alignment:
| Q |
1 |
agacactattttgaaagaaatatgattcgagatgtaagaaaaacgttgcatagagataagaagaaatacagtgtgacttttactctttttgtgtttttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55776452 |
agacactattttgaaagaaatatgattcgagatgtaagaaaaacgttgcatagagataagaagaaatacagtgtgacttttactctttttgtgtttttgc |
55776353 |
T |
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| Q |
101 |
aaatcgatataaaacaaaggaagagcaatactagcaacacaatttctaatacaattgactaaaattcacatcttctcaccaaatctcaatctttatgatg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55776352 |
aaatcgatataaaacaaagg---------------aacacaatttctaatacaattgactaaaattcacatcttctcaccaaatctcaatctttatgatg |
55776268 |
T |
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| Q |
201 |
atttgatctaacaactcacatgatgtc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
55776267 |
atttgatctaacaactcacatgatgtc |
55776241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 55840630 - 55840419
Alignment:
| Q |
1 |
agacactattttgaaagaaatatgattcgagatgtaagaaaaacgttgcatagagataagaagaaatacagtgtgacttttactctttttgtgtttttgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55840630 |
agacactattttgaaagaaatatgattcgagatgtaagaaaaacgttgcatagagataagaagaaatacagtgtgacttttactctttttgtgtttttgc |
55840531 |
T |
|
| Q |
101 |
aaatcgatataaaacaaaggaagagcaatactagcaacacaatttctaatacaattgactaaaattcacatcttctcaccaaatctcaatctttatgatg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55840530 |
aaatcgatataaaacaaagg---------------aacacaatttctaatacaattgactaaaattcacatcttctcaccaaatctcaatctttatgatg |
55840446 |
T |
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| Q |
201 |
atttgatctaacaactcacatgatgtc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
55840445 |
atttgatctaacaactcacatgatgtc |
55840419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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