View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7609_low_32 (Length: 239)

Name: NF7609_low_32
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7609_low_32
NF7609_low_32
[»] chr1 (2 HSPs)
chr1 (1-205)||(7582718-7582922)
chr1 (13-204)||(7098336-7098527)
[»] chr5 (9 HSPs)
chr5 (124-196)||(17981952-17982024)
chr5 (78-205)||(30243362-30243489)
chr5 (122-205)||(30434852-30434935)
chr5 (20-204)||(30205438-30205622)
chr5 (122-205)||(30339515-30339598)
chr5 (1-102)||(30203059-30203160)
chr5 (122-205)||(4380688-4380771)
chr5 (53-98)||(17981881-17981926)
chr5 (122-166)||(30714463-30714507)
[»] chr4 (1 HSPs)
chr4 (127-205)||(20297593-20297671)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 7582922 - 7582718
Alignment:
Q  1 gtttccaaacatctcctttgggaaggatgttattccttcgcctccatcaagtgtaagggtggtaagacaatacaagctagagattgacttcagcaactca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7582922 gtttccaaacatctcctttgggaaggatgttattccttcgcctccatcaagtgtaagggtggtaagacaatacaagctagagattgacttcagcaactca 7582823  T
Q  101 ttagtacatttccgtactctcaggtctttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7582822 ttagtacatttccgtactctcaggtctttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaaca 7582723  T
Q  201 tctcc 205  Q
    |||||    
T  7582722 tctcc 7582718  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 7098336 - 7098527
Alignment:
Q  13 ctcctttgggaaggatgttattccttcgcctccatcaagtgtaagggtggtaagacaatacaagctagagattgacttcagcaactcattagtacatttc 112  Q
    ||||||||||||||||||||||||||| |||| || ||| |||||||||||||||| ||| |||||||||||||||||||||| || |||| ||||||      
T  7098336 ctcctttgggaaggatgttattccttcacctctataaagggtaagggtggtaagaccataaaagctagagattgacttcagcatcttattattacattca 7098435  T
Q  113 cgtactctcaggtctttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctc 204  Q
      |||    |||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  7098436 tctacatagaggtctctaacagatggaagacacggaagttcaagtttagggcaattgtcgatttccaaaatagaaagacaaggaaacgtctc 7098527  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 17981952 - 17982024
Alignment:
Q  124 gtctttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaagga 196  Q
    |||||||||||||||||| ||||||||||||||||||   |||||   |||||||||||||||||||||||||    
T  17981952 gtctttaacagatggaaggcacggaagttcaagtttatcacaatttcggatgttcaaaatagaaagacaagga 17982024  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 30243489 - 30243362
Alignment:
Q  78 tagagattgacttcagcaactcattagtacatttccgtactctcaggtctttaacagatggaagacacggaagttcaagtttagggcaattgttgatgtt 177  Q
    ||||||||||| |||| ||||||||  |||||| || |||    |||||||||| |||||||||||| || ||| ||||||||||||| ||   ||| |     
T  30243489 tagagattgacctcagtaactcattgttacattcccatacaaagaggtctttaagagatggaagacatggcagtccaagtttagggcatttccagatatc 30243390  T
Q  178 caaaatagaaagacaaggaaacatctcc 205  Q
    |||| |||||||||||||||||||||||    
T  30243389 caaactagaaagacaaggaaacatctcc 30243362  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 30434852 - 30434935
Alignment:
Q  122 aggtctttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctcc 205  Q
    |||||||||| |||||||||||| || ||| ||||||||||||| ||   ||| | |||| |||||||||||||||||||||||    
T  30434852 aggtctttaagagatggaagacatggcagtccaagtttagggcatttccagatatccaaactagaaagacaaggaaacatctcc 30434935  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 30205438 - 30205622
Alignment:
Q  20 gggaaggatgttattccttcgcctccatcaagtgtaagggtggtaagacaatacaagctagagattgacttcagcaactcattagtacatttccgtac-t 118  Q
    |||||||||||||||| ||  |||||| | || |||||| || |||||| | | ||||||||||||||| |||||||||||||  |||||  |  ||| |    
T  30205438 gggaaggatgttattcttttacctccagcgagggtaaggctgttaagaccacaaaagctagagattgacctcagcaactcattgttacatcccaatacat 30205537  T
Q  119 ctcaggtctttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctc 204  Q
    || |||| ||||| ||||  |||||| || ||| ||||||||||||||  |  |||| | |||  |||||||||||||||||||||    
T  30205538 ct-aggtttttaagagatacaagacatggcagtccaagtttagggcaaaaggagatggttaaacgagaaagacaaggaaacatctc 30205622  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 30339598 - 30339515
Alignment:
Q  122 aggtctttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctcc 205  Q
    |||||||||| |||||||||||| || ||| ||| ||||||||||| |  |||  ||||  |||||||||||||||||||||||    
T  30339598 aggtctttaagagatggaagacatggcagtccaattttagggcaataggagattgtcaagttagaaagacaaggaaacatctcc 30339515  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 30203059 - 30203160
Alignment:
Q  1 gtttccaaacatctcctttgggaaggatgttattccttcgcctccatcaagtgtaagggtggtaagacaatacaagctagagattgacttcagcaactca 100  Q
    ||||| ||||||| ||||||||||||| ||||||||||| | ||  |||||   |||||  ||||||| ||| ||||||||||| ||| |||| ||||||    
T  30203059 gtttctaaacatcccctttgggaaggaggttattccttcacttctctcaaggtcaagggaagtaagaccatagaagctagagatcgacctcagtaactca 30203158  T
Q  101 tt 102  Q
    ||    
T  30203159 tt 30203160  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 4380688 - 4380771
Alignment:
Q  122 aggtctttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctcc 205  Q
    |||| ||||| ||||||| |||| || ||| |||||||||||||||| | ||| | |||  |||||||||||||||||| ||||    
T  4380688 aggtgtttaagagatggatgacatggcagtccaagtttagggcaattctagatatccaagttagaaagacaaggaaacaactcc 4380771  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 17981881 - 17981926
Alignment:
Q  53 gtaagggtggtaagacaatacaagctagagattgacttcagcaact 98  Q
    ||||||||| |||||| ||||| |||||||||||||||||| ||||    
T  17981881 gtaagggtgttaagactatacatgctagagattgacttcagtaact 17981926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 30714507 - 30714463
Alignment:
Q  122 aggtctttaacagatggaagacacggaagttcaagtttagggcaa 166  Q
    |||||||||| |||||||||||| || ||| ||||||||||||||    
T  30714507 aggtctttaagagatggaagacatggcagtccaagtttagggcaa 30714463  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 20297671 - 20297593
Alignment:
Q  127 tttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctcc 205  Q
    ||||| |||||||||||| || | | ||||||||||||| |||  ||| |||||  |||||||||||||||||||||||    
T  20297671 tttaagagatggaagacatggcattccaagtttagggcatttggagattttcaacttagaaagacaaggaaacatctcc 20297593  T

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