View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_low_35 (Length: 239)
Name: NF7609_low_35
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13532469 - 13532690
Alignment:
| Q |
1 |
atttgctacggatgagtatgtggacagattgacttgttaattaatggtgggttggaacttcaaaatttgcctacaatatttgaaggtgaaatcgatttat |
100 |
Q |
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| T |
13532469 |
atttgctacggatgagtatgtggacagattgacttgttaattaatggtgggttggaactttaaa-tttgcctacaatatttgaaggttaaatcgatttat |
13532567 |
T |
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| Q |
101 |
ttattttttgagtaggtttgatgtgtttattgatactcttatagatgataatgcatgttttgtgcaaagaagaagctagcaatgctctaagatggtccca |
200 |
Q |
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| T |
13532568 |
ttattttttgagtatgtttgatgtgtttattgatactattatagatgagaatgcatgttttgtgcaacgaagaagctagcaatgctctaagatggtccca |
13532667 |
T |
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| Q |
201 |
aatgacaaatacagcagaccaag |
223 |
Q |
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| T |
13532668 |
aatgacaaatacagcagaccaag |
13532690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13622009 - 13622230
Alignment:
| Q |
1 |
atttgctacggatgagtatgtggacagattgacttgttaattaatggtgggttggaacttcaaaatttgcctacaatatttgaaggtgaaatcgatttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |
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| T |
13622009 |
atttgctacggatgagtatgtggacagattgacttgttaattaatggtgggttggaactttaaa-tttgcctacaatatttgaaggttaaatcgatttat |
13622107 |
T |
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| Q |
101 |
ttattttttgagtaggtttgatgtgtttattgatactcttatagatgataatgcatgttttgtgcaaagaagaagctagcaatgctctaagatggtccca |
200 |
Q |
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| T |
13622108 |
ttattttttgagtatgtttgatgtgtttattgatactattatagatgagaatgcatgttttgtgcaacgaagaagctagcaatgctctaagatggtccca |
13622207 |
T |
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| Q |
201 |
aatgacaaatacagcagaccaag |
223 |
Q |
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| T |
13622208 |
aatgacaaatacagcagaccaag |
13622230 |
T |
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Back To:
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