View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_low_36 (Length: 217)
Name: NF7609_low_36
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_low_36 |
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| [»] scaffold1211 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 26377193 - 26377005
Alignment:
| Q |
19 |
catttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataagttgaacgaactttcgagtacaatacaacccataagc |
118 |
Q |
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| T |
26377193 |
catttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataagttgaacgaactttcgagtacaatacaacccataagc |
26377094 |
T |
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| Q |
119 |
atatgctgcacctttcatagttgcttaactataccacagcaaattgggac--agtgtccatatttgtaggttttctactttataatatt |
205 |
Q |
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| T |
26377093 |
atatgctgcacctttcatagttgcttaactataccacagcaaattgggacatagtgtccatatttgtaggttttctactttataatatt |
26377005 |
T |
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Target: scaffold1211 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 1152 - 965
Alignment:
| Q |
20 |
atttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataagttgaacgaactttcgagtacaatacaacccataagca |
119 |
Q |
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| T |
1152 |
atttatcaacagtctttgcagtcagatttgctagtctaaaatctagtctctaccatcaataagtttaagaaactttcaaatacaatacaaaccgtaagca |
1053 |
T |
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| Q |
120 |
tatgctgcacctttcatagttgcttaactataccacagcaaattgggac---agtgtccatatttgtaggttttctactttataatatt |
205 |
Q |
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| T |
1052 |
tatgtggaacctttcatggttgcataactatactgcagc-cattgggacataagtgtccatatttgtaggtattcaactttataatatt |
965 |
T |
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