View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_low_4 (Length: 570)
Name: NF7609_low_4
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 44746259 - 44745749
Alignment:
| Q |
1 |
taacgccttcattttaaaatacccggtcttcataggttcatatatatggcatt----tattcattacatgttta--caattatccattttcacgcattct |
94 |
Q |
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| T |
44746259 |
taacgccttcattttaaaatacccggtcttcataggttcatatatatggcattaatttattcattacatgtatatacaattatccattttcacgcattct |
44746160 |
T |
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| Q |
95 |
atttcaaaaatacacatgttcgttatggtagtgatgtatcacttaatccacatgcatcattttctcatgtcattctgtatcacttgacaatttaagaagt |
194 |
Q |
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| T |
44746159 |
atttcaaaaatacacatgttcgttatggtagtgatgtatcacttaatccacatgcatcattttctcatctcattctgtatcacttgacaatttaagaagt |
44746060 |
T |
|
| Q |
195 |
aggttgatcgatttaggacaaatattgcgtgaaagaataagtagtgtaactcaaatgtattcatcatccaatgcacgaaaatcagataggacaattccca |
294 |
Q |
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| T |
44746059 |
aggttgatcgatttaggacaaatattgcgtgaaagaataagcagtgtaactcaaatgttttcatcatccaatgcacgaaaatcagataggacaattccca |
44745960 |
T |
|
| Q |
295 |
taattcctcttctctttcgcacaatatgatttgccgcaaatttttaacctaaatcttaaatgggcaagaactacacgtaagagatagaaaatggatacat |
394 |
Q |
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| T |
44745959 |
taattcctcttctctttcgcacaatatgatttgccgcaaatttttaacctaaatcttaaatgggcaagaacttcacgtaagagatagaaaatggatacat |
44745860 |
T |
|
| Q |
395 |
gtaagataagaggtcaaactcattcatctcaagatagaactatcgaaacctcttgttagaaaagctgccaaatgcctagatttaaagtcaataataatct |
494 |
Q |
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| T |
44745859 |
gtaagataagaggtcaaactcattcatctcaagatagaactatcgaaacctcttgttagaaaagctgccaaatgcctagatttaaagtcaataataatct |
44745760 |
T |
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| Q |
495 |
ttgacatatat |
505 |
Q |
| |
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||||||||||| |
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| T |
44745759 |
ttgacatatat |
44745749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 500 - 564
Target Start/End: Complemental strand, 44745365 - 44745301
Alignment:
| Q |
500 |
atatatgtatcaaagaaaaacataaagtggacattagtgtgagttccaaatctgatattcttcga |
564 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44745365 |
atatctgtatcaaagaaaaacataaagtggacattagtgtgagttccaaatctgatatacttcga |
44745301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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