View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7609_low_5 (Length: 548)
Name: NF7609_low_5
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7609_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 21559827 - 21560359
Alignment:
| Q |
1 |
atcaagttacacaattatagtttttacaaaaataaacatctagacaaagcaattaaaagttgaaagaatcttatgagccaaatatgtttaatactaagcc |
100 |
Q |
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| T |
21559827 |
atcaaattacacaattatagtttttacaaaaataaacatctagacaaagcaattaaaagttgaaagaatcttatgagccaaatatgtttaatactaagcc |
21559926 |
T |
|
| Q |
101 |
cgatggatctccctaagatgatgagtcagacctccttctagaaggatctaaatagtttctattatgatgagtcattgtttattagaatcatcaaggttta |
200 |
Q |
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| T |
21559927 |
cgatggatctccctaagatgatgagtcagacctccttctagaaggatctaaatagtttctattatgatgagtcattgtttattagaatcatcaaggttta |
21560026 |
T |
|
| Q |
201 |
tgcaacaacgataaaggtcacgtcgattgcatttgttcatccctattaagagatcca-attcgacaatgtcatgaaaatgtttttattggttggtaacct |
299 |
Q |
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| T |
21560027 |
tgcaacaacgataaaggtcacgttgattgcatttgttcatcactattaagagatccacattcgacaatgtcatgaaaatgtttttattggttggtaacct |
21560126 |
T |
|
| Q |
300 |
tctattaggtcacctcaattggaccatccgaatcacacttcatatatgaagttctcatcataaaaggtgtgttaagagtctcacattcgatatgaaatat |
399 |
Q |
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| T |
21560127 |
tatattaggtcacctcaattggaccatccgaatcacacttcatatatgaagttctcattataaaaggtgtgttaagagtctcacattcgatatgaaatat |
21560226 |
T |
|
| Q |
400 |
agtatgtaagtgtgtttataagtcaggtcactgaggacatacatatcggttttataaagatgagttagactcaacccaaattattctcccaagaataaga |
499 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
21560227 |
agcatgtaagtgtgtttataagtcaggtcactgaggacatacatatcggttttataaagttgagttaggttcaacccaaattattctcccaagaataaga |
21560326 |
T |
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| Q |
500 |
atcacgaaatgatcgcaaccctaattcgctagt |
532 |
Q |
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| T |
21560327 |
atcacgaaatgatcgcaaccctaattcgctagt |
21560359 |
T |
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