View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7609_low_7 (Length: 474)

Name: NF7609_low_7
Description: NF7609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7609_low_7
NF7609_low_7
[»] chr5 (1 HSPs)
chr5 (18-466)||(3993784-3994220)
[»] chr8 (4 HSPs)
chr8 (348-416)||(32736486-32736554)
chr8 (342-396)||(32927936-32927990)
chr8 (350-392)||(15677810-15677852)
chr8 (348-440)||(16972057-16972149)
[»] chr1 (4 HSPs)
chr1 (343-416)||(11049274-11049347)
chr1 (342-393)||(1514390-1514441)
chr1 (342-393)||(7524160-7524211)
chr1 (353-393)||(39395935-39395975)
[»] chr4 (5 HSPs)
chr4 (342-441)||(32818357-32818456)
chr4 (341-386)||(16552009-16552054)
chr4 (342-407)||(35065096-35065161)
chr4 (342-406)||(8604609-8604673)
chr4 (342-382)||(22250284-22250324)
[»] chr6 (2 HSPs)
chr6 (348-416)||(17225876-17225944)
chr6 (342-416)||(4910932-4911006)
[»] chr3 (1 HSPs)
chr3 (373-441)||(4401424-4401492)
[»] chr7 (2 HSPs)
chr7 (342-423)||(45557382-45557463)
chr7 (349-389)||(17111896-17111936)
[»] chr2 (4 HSPs)
chr2 (342-423)||(13912804-13912885)
chr2 (342-391)||(16518827-16518876)
chr2 (349-441)||(33019150-33019242)
chr2 (355-407)||(33502270-33502322)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 3994220 - 3993784
Alignment:
Q  18 ccctcatggttcaacagtggtatcagaatttggttcgacatgatggaggagcgggagagattttttgtgtaggatgaatctcacaaagtgagaagatcta 117  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||            ||||| ||||||||||||||||||    
T  3994220 ccctcatggttcaatagtggtatcaggatttggttcgacatgatggaggagcgggagagatttt------------aatcttacaaagtgagaagatcta 3994133  T
Q  118 taaacatgatgcctaagattttagcaatgaaactcttcctcatcgtccaacaatgacaaactaatcaagagaacacaatcttttattaaatttacttacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3994132 taaacatgatgcctaagattttagcaatgaaactcttcctcatcgtccaacaatgacaaactaatcaagagaacacaatcttttattaaatttacttacc 3994033  T
Q  218 tttcgatcaaactttagaatatcaaattctttttccgtacaaataattannnnnnnattggagaatataaatatgaattagcatgtgtttggttgtgtaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||||||||||||||||||||||||| ||    
T  3994032 tttcgatcaaactttagaatatcaaattctttttccgtacaaatatttatttttttattggagaatataaatatgaattagcatgtgtttggttgtgcaa 3993933  T
Q  318 agaagataattgattttgatagaattggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatcagaaactacag 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3993932 agaagataattgattttgatagaattggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaataaaatttagaatcagaaactacag 3993833  T
Q  418 attctaattttaaatataatcaatcatgaatgccgaatcgattcttctc 466  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  3993832 attctaattttaaatataatcaatcatgaatgccaaatcaattcttctc 3993784  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 32736554 - 32736486
Alignment:
Q  348 acattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatcagaaactaca 416  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||| || |||| ||| | ||||||||    
T  32736554 acattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaattttaaaataaaaaactaca 32736486  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 32927990 - 32927936
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaa 396  Q
    ||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  32927990 ttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaa 32927936  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 15677810 - 15677852
Alignment:
Q  350 attcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaa 392  Q
    |||||||||| ||||| | ||||||||||||||||||||||||    
T  15677810 attcatgtaacaatgagttgaactataaatttgtgtgtaaaaa 15677852  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 440
Target Start/End: Original strand, 16972057 - 16972149
Alignment:
Q  348 acattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatcagaaactacagattctaattttaaatataatcaa 440  Q
    |||||||||||||| ||| | |||| |||||||||||| ||||||| || | || ||| | |||||||| ||||||  || ||||| ||||||    
T  16972057 acattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactacaaattctagcttcaaatacaatcaa 16972149  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 416
Target Start/End: Complemental strand, 11049347 - 11049274
Alignment:
Q  343 tggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatcagaaactaca 416  Q
    |||| ||||||| |||||| ||| | ||||||||||||||||||||||||| || |||||||||| || |||||    
T  11049347 tggatacattcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctaca 11049274  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 1514441 - 1514390
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaat 393  Q
    ||||| |||||||||||||||||| | |||| ||||||||||||||||||||    
T  1514441 ttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaat 1514390  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 7524211 - 7524160
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaat 393  Q
    ||||| ||||| |||||||| ||| | |||||||||||||||||||||||||    
T  7524211 ttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaat 7524160  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 39395975 - 39395935
Alignment:
Q  353 catgtaaaaatgaatcgaactataaatttgtgtgtaaaaat 393  Q
    ||||||||||||| |||||| ||||||||| ||||||||||    
T  39395975 catgtaaaaatgagtcgaacaataaatttgagtgtaaaaat 39395935  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 441
Target Start/End: Original strand, 32818357 - 32818456
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatcagaaactacagattctaattttaaatataatcaat 441  Q
    ||||| |||||||||||||| | | | |||||||||||||||||| |||||| || | |||||||| || ||||| ||||||  || ||||| |||||||    
T  32818357 ttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaat 32818456  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 16552054 - 16552009
Alignment:
Q  341 attggaaacattcatgtaaaaatgaatcgaactataaatttgtgtg 386  Q
    |||||| |||||||||||||| ||| | ||||||||||||||||||    
T  16552054 attggatacattcatgtaaaagtgagttgaactataaatttgtgtg 16552009  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 35065161 - 35065096
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatca 407  Q
    ||||| |||||||||||||| ||| | ||  ||||||||||||||||||||| || | ||||||||    
T  35065161 ttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatca 35065096  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 8604609 - 8604673
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatc 406  Q
    ||||| |||||||||||||| || ||  |||||||||||||||||| ||||| || | |||||||    
T  8604609 ttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatc 8604673  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 22250324 - 22250284
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttg 382  Q
    ||||| |||||||||||||| |||||||||| |||||||||    
T  22250324 ttggatacattcatgtaaaagtgaatcgaacaataaatttg 22250284  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 17225944 - 17225876
Alignment:
Q  348 acattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatcagaaactaca 416  Q
    |||||||||||||| ||| | ||||||||||||||| ||||||||| || | |||||||| || |||||    
T  17225944 acattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctaca 17225876  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 4911006 - 4910932
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatcagaaactaca 416  Q
    ||||| ||||| |||||||| ||| ||||||||||||||||| ||| ||||| || | |||||||| || |||||    
T  4911006 ttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctaca 4910932  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 4401424 - 4401492
Alignment:
Q  373 tataaatttgtgtgtaaaaatgaaatttagaatcagaaactacagattctaattttaaatataatcaat 441  Q
    |||||||| |||||||||||| || |||| ||||| || ||||| |||| ||||||||||| |||||||    
T  4401424 tataaattggtgtgtaaaaatcaactttaaaatcaaaagctacaaattcaaattttaaatagaatcaat 4401492  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 45557463 - 45557382
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatcagaaactacagattcta 423  Q
    ||||| |||||||||||||| ||| | || ||| |||||||||||||||||| ||   |||||| | || ||||||||||||    
T  45557463 ttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatcctagaattaaaagctacagattcta 45557382  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 17111936 - 17111896
Alignment:
Q  349 cattcatgtaaaaatgaatcgaactataaatttgtgtgtaa 389  Q
    ||||||||||||||||| | ||| |||||||||||||||||    
T  17111936 cattcatgtaaaaatgagtagaattataaatttgtgtgtaa 17111896  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 13912885 - 13912804
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatcagaaactacagattcta 423  Q
    ||||| ||| |||||||||||||| | ||||  ||||||||||||||||||| || | |||||| | ||| |||| ||||||    
T  13912885 ttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaattcta 13912804  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 16518876 - 16518827
Alignment:
Q  342 ttggaaacattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaa 391  Q
    ||||| |||||||||||||| ||| | |||||||||||||||| ||||||    
T  16518876 ttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaaaa 16518827  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 33019150 - 33019242
Alignment:
Q  349 cattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatcagaaactacagattctaattttaaatataatcaat 441  Q
    ||||||||||||| ||| | ||||||||||||| ||||| ||||| || | || || || || ||||| ||||||  || |||||||||||||    
T  33019150 cattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatataatcaat 33019242  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 33502322 - 33502270
Alignment:
Q  355 tgtaaaaatgaatcgaactataaatttgtgtgtaaaaatgaaatttagaatca 407  Q
    ||||||| ||| | ||||||||||| ||||||||||||| || ||||||||||    
T  33502322 tgtaaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatca 33502270  T

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