View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7610_high_1 (Length: 604)
Name: NF7610_high_1
Description: NF7610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7610_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 108 - 588
Target Start/End: Complemental strand, 34839813 - 34839335
Alignment:
| Q |
108 |
tgttatcatagcacattcgtactgaagaaaaagagttatcaacgtt-aaggtataaattctcaaactagatggtttatccatcatctatgaagtttgaat |
206 |
Q |
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| T |
34839813 |
tgttatcatagaacattcgtactgaagaaatagagttatcaacgtttaaggtataaattctcaaactagatggtttatccatcatctatgaagtttgaat |
34839714 |
T |
|
| Q |
207 |
gtcatacttatttagacacacgcaaccatgcgctcgcgtgcacacataattatacatgtaatcaggtcaacatatgaaccaaagcgagccgaactatata |
306 |
Q |
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||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34839713 |
gtcgtatttatttagacacacgcacgcatgcgttcgcgtgcacacataattatacatgtaatcaggtcaacatatgaaccaaagcg--ccgaactatata |
34839616 |
T |
|
| Q |
307 |
gata-----atttaagttcaatgcatttagttnnnnnnnnnnnnnntttaattttaaactcaagttccgaccgaatggtagtatcaagctccgcaaccta |
401 |
Q |
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| T |
34839615 |
gatagtttaatttaagttcaatgcatttagttaaaaaaaac------ttaattttaaactgaagttccaaccgaatggtagtatcaagctccgcaaccta |
34839522 |
T |
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| Q |
402 |
tttacaattatacaagaataacatttcaaaatatacacaaaaacagttgtccaagaaggtacaaataacttttaactcatttatttatccttaatattaa |
501 |
Q |
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| T |
34839521 |
tttacaattatacaagaataacatttcaaaatatacacaaaaacagttgtccaagaaggtacaaataacttttaacttatttatttatccttaatattaa |
34839422 |
T |
|
| Q |
502 |
agggtttaacgaaaatacatacctttgtttgatatatgatgatggatgtgctaacacagcagatctgagactaagaggggggagaag |
588 |
Q |
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| T |
34839421 |
agggtttaacgaaaatacatacctttgtttgatatatgatgatggatgtgctaacacagcagatccgagactaagaggggggagaag |
34839335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34839949 - 34839847
Alignment:
| Q |
1 |
atagataatccaaattcaaacgatattggtgtagaaaagcatagaaaacagtttgcaaggactttcactgttcccagtttgaaaatgccaatagatggga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34839949 |
atagataatccaaattcaaacgatgttggtgtagaaaagcatagaaaacagtttgcaaggactttcactgttcccagtttgaaaatgccaatagatggga |
34839850 |
T |
|
| Q |
101 |
ttt |
103 |
Q |
| |
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||| |
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| T |
34839849 |
ttt |
34839847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 34838588 - 34838676
Alignment:
| Q |
142 |
gttatcaacgttaaggtataaattctcaaactagatggtttatccatcatctatgaagtttgaatgtcatacttatttagacacacgca |
230 |
Q |
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| T |
34838588 |
gttatcaatattaaggtataaattcttaaactagatggtttatccatcatctatgaagtttgaatgtcgtatttatttagacacacgca |
34838676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 162 - 333
Target Start/End: Original strand, 34840728 - 34840898
Alignment:
| Q |
162 |
aattctcaaactagatggtttatccatcatctatgaagtttgaatgtcatacttatttagacacacgcaaccatgcgctcgcgtgcacacataattatac |
261 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| | | |||| || | |||||| || ||| | || ||||| |
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| T |
34840728 |
aattctcaaactagatggtttacacatcatctttgaagtttgaatgtcgtacttatttatatatgcgcatgcacgtgctcgcatgtacagacaactatac |
34840827 |
T |
|
| Q |
262 |
atgtaatcaggtcaacatatgaaccaaagcgagccgaactatatagataatttaagttcaatgcatttagtt |
333 |
Q |
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|||| ||||||||||||| | ||||||||| ||||||||||||| || || ||||| | |||||||| |
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| T |
34840828 |
gaaaaatcgagtcaacatatgaatc-aagcgagccaaactatatagatagttcaaattcaacgtatttagtt |
34840898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35865787 - 35865840
Alignment:
| Q |
1 |
atagataatccaaattcaaacgatattggtgtag-aaaagcatagaaaacagtt |
53 |
Q |
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|||||| ||||||||||||||||| || || ||| ||||||||||||||||||| |
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| T |
35865787 |
atagatcatccaaattcaaacgatgttagtatagaaaaagcatagaaaacagtt |
35865840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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