View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7610_high_2 (Length: 552)
Name: NF7610_high_2
Description: NF7610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7610_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 248 - 537
Target Start/End: Complemental strand, 54474652 - 54474364
Alignment:
| Q |
248 |
aattatgttatacctgactcattcttggacgccttcttcctgagtgcctaacacaagcagaagcacaagctaccatacgtgtcatatcttgtttctcata |
347 |
Q |
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| T |
54474652 |
aattatgttatacctgactcattcttggacgccttcttcctgagtgcctaacacaagcagaagcacaagctaccatacgtgtcatatcttgtttctcata |
54474553 |
T |
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| Q |
348 |
attttcctctaaacgtggatccaccaatccaagatatattccatattccagtgcttttgaacaaagtggtctagcctgcattttcataaacaaagtatgg |
447 |
Q |
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| T |
54474552 |
attttcctctaaacgtggatccaccaatccaagatatattccatattccagtgcttttgaacaaagtggtctagcctgcattttcataaacaaagtatgg |
54474453 |
T |
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| Q |
448 |
tacgtaattataggaatatgacattaatgataatctagtattggaaatattcataatcaaaataatgtcgaaatatgaaatgcaatatat |
537 |
Q |
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| T |
54474452 |
tacgtaattataggaatatgacatt-atgataatctagtattggaaatattcataatcaaaataatgtcgaaatatgaaatgcaatatat |
54474364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 54474937 - 54474702
Alignment:
| Q |
14 |
cctgtgctactttccaatgctagtttccggaactttttcatgtcagcactgtatgtccctgcatcataatctccacttgcgctactgtacatagcactat |
113 |
Q |
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| T |
54474937 |
cctgtgctactttccaatgctagtttccggaactttttcatgtcagcactgtatgtccctgcatcataatctccacttgcgctactgtacatagcactat |
54474838 |
T |
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| Q |
114 |
gtccaggtttcactccatcctggtttataagcacttctagtgaagcatctccttccagtacccgtacaatctattcaattcaaatacataaatatatttc |
213 |
Q |
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| T |
54474837 |
gtccaggtttcactccatcctggtttataagcacttctagtgaagcatctccttccagtacccgtacaatctattcaattcaaatacataaatatatttc |
54474738 |
T |
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| Q |
214 |
atgtttttgttagcatataatataactaaatatcaa |
249 |
Q |
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| T |
54474737 |
atgtttttgttagcatataatataactaaatatcaa |
54474702 |
T |
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