View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7610_low_3 (Length: 486)

Name: NF7610_low_3
Description: NF7610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7610_low_3
NF7610_low_3
[»] chr5 (9 HSPs)
chr5 (74-468)||(29642277-29642671)
chr5 (7-468)||(29647594-29648059)
chr5 (74-468)||(29597317-29597704)
chr5 (72-244)||(29593962-29594135)
chr5 (74-193)||(29820950-29821069)
chr5 (9-77)||(29597176-29597244)
chr5 (10-73)||(29820771-29820834)
chr5 (308-429)||(18964822-18964943)
chr5 (330-396)||(42298101-42298167)
[»] chr7 (32 HSPs)
chr7 (303-429)||(19344562-19344688)
chr7 (310-429)||(19325979-19326098)
chr7 (308-389)||(14076675-14076756)
chr7 (308-389)||(14386703-14386784)
chr7 (74-137)||(19325731-19325794)
chr7 (308-420)||(12819908-12820020)
chr7 (74-140)||(19645438-19645504)
chr7 (323-429)||(22021349-22021455)
chr7 (295-392)||(660826-660923)
chr7 (88-147)||(12819712-12819771)
chr7 (318-396)||(18514789-18514867)
chr7 (310-392)||(22063636-22063718)
chr7 (308-429)||(19351061-19351182)
chr7 (297-396)||(1985936-1986035)
chr7 (308-387)||(19357909-19357988)
chr7 (318-393)||(19604465-19604540)
chr7 (74-134)||(22064351-22064411)
chr7 (318-386)||(29454105-29454173)
chr7 (308-392)||(29874505-29874589)
chr7 (308-363)||(19374779-19374834)
chr7 (314-392)||(22028622-22028700)
chr7 (309-386)||(19722018-19722095)
chr7 (91-136)||(20057832-20057877)
chr7 (82-131)||(20133088-20133137)
chr7 (74-131)||(22100751-22100808)
chr7 (88-133)||(29874827-29874872)
chr7 (320-397)||(36263042-36263119)
chr7 (86-130)||(6864583-6864627)
chr7 (308-392)||(6864799-6864882)
chr7 (308-396)||(9807814-9807902)
chr7 (313-345)||(19779643-19779675)
chr7 (313-345)||(19887708-19887740)
[»] chr4 (9 HSPs)
chr4 (295-414)||(53790525-53790644)
chr4 (308-392)||(53774834-53774918)
chr4 (308-392)||(11970974-11971058)
chr4 (85-137)||(53790820-53790872)
chr4 (318-392)||(11981685-11981759)
chr4 (222-270)||(53790681-53790729)
chr4 (318-397)||(3565733-3565812)
chr4 (318-380)||(3557732-3557794)
chr4 (321-391)||(35767013-35767083)
[»] chr6 (10 HSPs)
chr6 (318-397)||(6921352-6921431)
chr6 (318-429)||(6947882-6947993)
chr6 (310-429)||(24254420-24254539)
chr6 (308-429)||(20770607-20770728)
chr6 (315-393)||(6954518-6954596)
chr6 (74-136)||(24254175-24254237)
chr6 (318-397)||(6935220-6935299)
chr6 (308-375)||(17369675-17369742)
chr6 (320-397)||(6942971-6943048)
chr6 (187-267)||(6942814-6942894)
[»] chr2 (8 HSPs)
chr2 (308-429)||(18908801-18908922)
chr2 (308-392)||(18920757-18920841)
chr2 (308-387)||(18913549-18913628)
chr2 (318-380)||(554482-554544)
chr2 (318-396)||(14514890-14514968)
chr2 (332-386)||(25698507-25698561)
chr2 (332-388)||(20975556-20975612)
chr2 (91-131)||(21021047-21021087)
[»] chr1 (2 HSPs)
chr1 (318-392)||(4570921-4570995)
chr1 (318-392)||(10218979-10219053)
[»] chr8 (6 HSPs)
chr8 (308-397)||(27618480-27618569)
chr8 (332-392)||(11339435-11339495)
chr8 (332-392)||(11345117-11345177)
chr8 (332-381)||(11338592-11338641)
chr8 (91-136)||(27618720-27618765)
chr8 (332-392)||(11358995-11359055)
[»] chr3 (1 HSPs)
chr3 (308-380)||(3625740-3625812)
[»] scaffold0867 (1 HSPs)
scaffold0867 (74-131)||(4424-4481)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 74 - 468
Target Start/End: Complemental strand, 29642671 - 29642277
Alignment:
Q  74 gtaaatcattgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttct 173  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29642671 gtaaatcattgtaaagaaacttactttcaacaaatccaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttct 29642572  T
Q  174 ttactctatttgttttcaaactataaagaattgctttgtgttgtacacagcttgcgaatatcaatgtttcaccattctcagaaagacagaatgggaaaag 273  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29642571 ttactctatttgttttcaaattataaagaattgctttgtgttgtacacagcttgcgaatatcaatgtttccccattctcagaaagacagaatgggaaaag 29642472  T
Q  274 ataatatttcgagtgaccaaaattatctactagtagattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgc 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29642471 ataatatttcgagtgaccaaaattatctactagtagattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgc 29642372  T
Q  374 catataacgaaatgagttttcttacgatggtgagaaaaacaaaggcgatccatcaaagtagtaatagttggttcagtatatggtggcactaaatt 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  29642371 catataacgaaatgagttttcttacgatggtgagaaaaacaaaggcgatccatgaaagtagcaatagttggttcagtatatggtggcactaaatt 29642277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 7 - 468
Target Start/End: Complemental strand, 29648059 - 29647594
Alignment:
Q  7 aataatataataacaaaacaattttattcaatctagatattaccaaacacttaggagtaggcaataggtaaatcattgtaaagaaacttactttcaacaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29648059 aataatataataacaaaacaattttattcaatctagatattaccaaacacttaggagtaggcaataggtaaatcattgtaaagaaacttactttcaacaa 29647960  T
Q  107 atcgaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttctttactctatttgttttcaaactataaagaattg 206  Q
    ||| |||||||| |||||||| ||||||||||| | ||||||  |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  29647959 atccaagccaaattttcaacacaatccttggaaaagcaccacaatattgcactaccaatagctccctttactctatttgttttcaaattataaagaattg 29647860  T
Q  207 ctttgtgttgtacacagcttgcgaatatcaatgtttcaccattctcagaaagacagaatgggaaaagataatatttcga----gtgaccaaaattatcta 302  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |    || |||||| |||||||    
T  29647859 ctttgtgtgctacatagcttgcgaatatcaatgtttcaccattctcagaaagacagaatgggaagagataatattccaagtacgtaaccaaacttatcta 29647760  T
Q  303 ctagtagattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatg 402  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  29647759 ctagtagattttgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatg 29647660  T
Q  403 gtgagaaaaacaaaggcgatccatcaaagtagtaatagttggttcagtatatggtggcactaaatt 468  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  29647659 gtgagaaaaacaaaggcaatccatcaaagtagcaatagttggttcaatatatggtggcactaaatt 29647594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 74 - 468
Target Start/End: Original strand, 29597317 - 29597704
Alignment:
Q  74 gtaaatcattgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttct 173  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29597317 gtaaatcattctaaagaa-cttactttcaacaaatcgaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttct 29597415  T
Q  174 ttactctatttgttttcaaactataaagaattgctttgtgttgtacacagcttgcgaatatcaatgtttcaccattctcagaaagacagaatgggaaaag 273  Q
    |||||||||||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29597416 ttactctatttgttttcaaattataaagaattgctttgtgtcctacatagcttgcgaatatcaatgtttcaccattctcagaaagacagaatgggaagag 29597515  T
Q  274 ataatatttcgagtgaccaaaattatctactagtagattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgc 373  Q
    |||||||| |||      ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  29597516 ataatattccga------aaaattatctacctgtagattttgaaaactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgc 29597609  T
Q  374 catataacgaaatgagttttcttacgatggtgagaaaaacaaaggcgatccatcaaagtagtaatagttggttcagtatatggtggcactaaatt 468  Q
    |||||||| |||||||||| |||   ||||||||||||||||||||| |||| ||||  || ||||||||||||||||||| ||| |||||||||    
T  29597610 catataacaaaatgagtttccttgaaatggtgagaaaaacaaaggcggtccagcaaaacagcaatagttggttcagtatatcgtgacactaaatt 29597704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 72 - 244
Target Start/End: Original strand, 29593962 - 29594135
Alignment:
Q  72 aggtaaatc-attgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctt 170  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||| |||||    
T  29593962 aggtaaatccattgtaaagaaacttactttcaagaaatcgaagccaaactttcaaaataatccttggaaaaccaccacattattgcactaccaaaagctt 29594061  T
Q  171 tctttactctatttgttttcaaactataaagaattgctttgtgttgtacacagcttgcgaatatcaatgtttca 244  Q
     |||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  29594062 gctttactctattcgttttcaaattataaagaattgctttgtgttctacatagcttgcgaatatcaatgtttca 29594135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 29820950 - 29821069
Alignment:
Q  74 gtaaatcattgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttct 173  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| || |   | |||||||||||| ||    
T  29820950 gtaaatcattgtaaagaaacttactttcaacaaatccaagctaaactttcaacataatccttggaaaaacaccacattgtccgattaccaatagcttgct 29821049  T
Q  174 ttactctatttgttttcaaa 193  Q
    ||||||||||  ||||||||    
T  29821050 ttactctattatttttcaaa 29821069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 29597176 - 29597244
Alignment:
Q  9 taatataataacaaaacaattttattcaatctagatattaccaaacacttaggagtaggcaataggtaa 77  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  29597176 taatataaaaacaaaacaattgtattcaatctagatattaccaaacacttgggagtaggcaataggtaa 29597244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 29820771 - 29820834
Alignment:
Q  10 aatataataacaaaacaattttattcaatctagatattaccaaacacttaggagtaggcaatag 73  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  29820771 aatataataacaaaacaatttgattcaatctagatattatcaaacacttaggagtaggcaatag 29820834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 18964822 - 18964943
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatggtgag 407  Q
    ||||||||| ||| ||||||||| |||||||||||||| | ||||| |||||||||  ||||||||||||||| |||||||||||| | | |||  ||||    
T  18964822 agattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatgag 18964921  T
Q  408 aaaaacaaaggcgatccatcaa 429  Q
     ||||||||||| || ||||||    
T  18964922 taaaacaaaggcaattcatcaa 18964943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 42298167 - 42298101
Alignment:
Q  330 ggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctt 396  Q
    |||||||||||||||| | ||||  ||||||||||||||| | ||||||||| |||| ||| |||||    
T  42298167 ggaattgagtccaagaattttcatctccaaattctatcatcttccatataactaaatcagtattctt 42298101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 303 - 429
Target Start/End: Original strand, 19344562 - 19344688
Alignment:
Q  303 ctagtagattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatg 402  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||| |||||  |||     
T  19344562 ctagaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagatt 19344661  T
Q  403 gtgagaaaaacaaaggcgatccatcaa 429  Q
    |||||||||||||||||  ||||||||    
T  19344662 gtgagaaaaacaaaggcagtccatcaa 19344688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 429
Target Start/End: Original strand, 19325979 - 19326098
Alignment:
Q  310 attctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatggtgagaa 409  Q
    |||||||||||| ||||| | ||||||||||||||||||||| | |||||||||   ||| ||||||||||| ||||||||| ||||   || |||||||    
T  19325979 attctgaaaactgattttgatgaattgagtccaagattgttctactccaaattccgacatatgccatataacaaaatgagttctcttgatatagtgagaa 19326078  T
Q  410 aaacaaaggcgatccatcaa 429  Q
    ||||||||||| ||||||||    
T  19326079 aaacaaaggcggtccatcaa 19326098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 14076756 - 14076675
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgag 389  Q
    ||||||||| ||||||||||||| |||||||||||||| | ||||| |||||||||  ||||||||||||||||||||||||    
T  14076756 agattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatgag 14076675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 14386784 - 14386703
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgag 389  Q
    ||||||||| ||||||||||||| |||||||||||||| | ||||| |||||||||  ||||||||||||||||||||||||    
T  14386784 agattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatgag 14386703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 19325731 - 19325794
Alignment:
Q  74 gtaaatcattgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttgg 137  Q
    |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19325731 gtaaatcatcataaagaaacttactttcaacaaattgaagccaaactttcaacataatccttgg 19325794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 420
Target Start/End: Original strand, 12819908 - 12820020
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatggtgag 407  Q
    ||||||||| |||| |||||||||||||||||||| |||||||||| |||||||||  |||| ||||||| ||| |||| |||| ||||  |   |||||    
T  12819908 agattctgacaactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaataagttctcttgagcatgtgag 12820007  T
Q  408 aaaaacaaaggcg 420  Q
    |||||||||||||    
T  12820008 aaaaacaaaggcg 12820020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 19645438 - 19645504
Alignment:
Q  74 gtaaatcattgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaat 140  Q
    |||||||||  |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  19645438 gtaaatcataataaagaaacttactttcaacaagttgaaaccaaactttcaacataatccttggaat 19645504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 429
Target Start/End: Complemental strand, 22021455 - 22021349
Alignment:
Q  323 attttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatggtgagaaaaacaaaggcgat 422  Q
    |||||||| |||||||||||||||| ||||| |||| | || ||||| ||||||||||| ||||| ||||||||   | | ||||||||||||| || ||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggttttcttcacaagatgagaaaaacaaatgcaat 22021356  T
Q  423 ccatcaa 429  Q
    |||||||    
T  22021355 ccatcaa 22021349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 392
Target Start/End: Original strand, 660826 - 660923
Alignment:
Q  295 attatctactagtagattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    |||||||| | | ||||| ||| |||||||||||||||||||||||||||| | ||||| || ||||||  |||| ||||||||||| ||| ||||||    
T  660826 attatctatttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaacgagttt 660923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 12819712 - 12819771
Alignment:
Q  88 agaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaataacacca 147  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  12819712 agaaactcagtttcaacaaattgaagccaaactttcaacataatccttggcatcacacca 12819771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 396
Target Start/End: Original strand, 18514789 - 18514867
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctt 396  Q
    |||||||||||||||||||||||||||| | ||||| |||||||||   ||||| |||||||| ||||||  |||||||    
T  18514789 aactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttctt 18514867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 392
Target Start/End: Complemental strand, 22063718 - 22063636
Alignment:
Q  310 attctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    ||||||| |||||||||| |  || ||||||||||| | || ||||||||||||  |||||||||||||||| ||||||||||    
T  22063718 attctgataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 19351061 - 19351182
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatggtgag 407  Q
    |||| ||||||||||||||| |||||| |||||||||| |  |||| ||||||||| ||||| ||||||| ||| ||||| ||  | ||  ||| |||||    
T  19351061 agatcctgaaaactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggtccttttgagattgtgag 19351160  T
Q  408 aaaaacaaaggcgatccatcaa 429  Q
    ||||||| || | |||||||||    
T  19351161 aaaaacatagacaatccatcaa 19351182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 396
Target Start/End: Original strand, 1985936 - 1986035
Alignment:
Q  297 tatctactagtagattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctt 396  Q
    ||||| |||| ||||||  | ||||||||||||  |||||||||||||||| |||||  ||||||||  |||||||||| | ||| ||||| ||||||||    
T  1985936 tatcttctagaagattcatataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggttttctt 1986035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 387
Target Start/End: Complemental strand, 19357988 - 19357909
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatg 387  Q
    |||| ||||||||||||||| | ||||||||||||||| | || || ||||||||| ||||| | ||||| |||||||||    
T  19357988 agatcctgaaaactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatg 19357909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 19604465 - 19604540
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagtttt 393  Q
    ||||||||||||||||||||||||| || | ||||| |||||||||  |||| ||||||||||  || ||||||||    
T  19604465 aactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagtttt 19604540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 22064411 - 22064351
Alignment:
Q  74 gtaaatcattgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataatcct 134  Q
    ||||||| | |||||||||||||||||||||||  |||| |||| |||||| |||||||||    
T  22064411 gtaaatcgtcgtaaagaaacttactttcaacaatacgaaaccaacctttcatcataatcct 22064351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 29454105 - 29454173
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaat 386  Q
    |||||||||||| ||||||||||||||| | ||||| ||||||||  |||||  |||||||||| ||||    
T  29454105 aactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 29874589 - 29874505
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    ||||| ||| ||||||||||||| ||| |||||||||| | |||||  |||||||   ||||||||||||||| ||||| |||||    
T  29874589 agattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaatcagttt 29874505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 19374834 - 19374779
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattc 363  Q
    |||||||  |||||||||||||| ||||||||||||||  |||||| |||||||||    
T  19374834 agattctttaaactaattttaagaaattgagtccaagaccgttcaactccaaattc 19374779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 22028700 - 22028622
Alignment:
Q  314 tgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    ||||||||||| ||||| |||||||||||||| | ||||| |||| | ||  |||||| ||||||||| ||||| ||||    
T  22028700 tgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 22028622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 19722095 - 19722018
Alignment:
Q  309 gattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaat 386  Q
    |||||| |||||| ||||| ||||||||||||||||| | || || ||||||||| ||||| | ||||| ||| ||||    
T  19722095 gattctaaaaactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat 19722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 20057832 - 20057877
Alignment:
Q  91 aacttactttcaacaaatcgaagccaaactttcaacataatccttg 136  Q
    |||||||| ||||||| | |||||||| ||||||||||||||||||    
T  20057832 aacttactatcaacaagttgaagccaagctttcaacataatccttg 20057877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 20133088 - 20133137
Alignment:
Q  82 ttgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataat 131  Q
    ||||| |||||||||||||||||||   ||| ||||||||||||||||||    
T  20133088 ttgtagagaaacttactttcaacaatatgaaaccaaactttcaacataat 20133137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 22100808 - 22100751
Alignment:
Q  74 gtaaatcattgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataat 131  Q
    |||||||||||||||| ||||||||||||||||   |||  ||| |||||||||||||    
T  22100808 gtaaatcattgtaaaggaacttactttcaacaataagaaatcaagctttcaacataat 22100751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 29874872 - 29874827
Alignment:
Q  88 agaaacttactttcaacaaatcgaagccaaactttcaacataatcc 133  Q
    |||||||||||||||||||||| || | || |||||||||||||||    
T  29874872 agaaacttactttcaacaaatcaaaactaagctttcaacataatcc 29874827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 397
Target Start/End: Complemental strand, 36263119 - 36263042
Alignment:
Q  320 ctaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 397  Q
    |||| ||||| || |||||||||||| | ||||| ||||||||||  ||| | ||||||||| |||| ||||||||||    
T  36263119 ctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttctta 36263042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 6864583 - 6864627
Alignment:
Q  86 aaagaaacttactttcaacaaatcgaagccaaactttcaacataa 130  Q
    |||| ||||||||||||||||| |||| |||| ||||||||||||    
T  6864583 aaaggaacttactttcaacaaaacgaaaccaagctttcaacataa 6864627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 392
Target Start/End: Original strand, 6864799 - 6864882
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    ||||| ||| ||||| |||||||||| ||||||||||| | ||||| |||||||||  |||||  |||||| || ||||||||||    
T  6864799 agattatgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagttt 6864882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 396
Target Start/End: Complemental strand, 9807902 - 9807814
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctt 396  Q
    ||||||||| || ||||| |||||| ||   ||||||| | ||||| |||||||||  |||| ||||||||||||||||  ||||||||    
T  9807902 agattctgataattaattgtaaggagtttcatccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttctt 9807814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 19779675 - 19779643
Alignment:
Q  313 ctgaaaactaattttaaggaattgagtccaaga 345  Q
    ||||||||||||||| |||||||||||||||||    
T  19779675 ctgaaaactaattttgaggaattgagtccaaga 19779643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 19887708 - 19887740
Alignment:
Q  313 ctgaaaactaattttaaggaattgagtccaaga 345  Q
    ||||||||||||||| |||||||||||||||||    
T  19887708 ctgaaaactaattttgaggaattgagtccaaga 19887740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 295 - 414
Target Start/End: Complemental strand, 53790644 - 53790525
Alignment:
Q  295 attatctactagtagattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttc 394  Q
    |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| | ||||||||  ||||||||| ||    
T  53790644 attatctacttgaagattctgaaaactaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataataaaatgagttctc 53790545  T
Q  395 ttacgatggtgagaaaaaca 414  Q
    |||  || ||||||||||||    
T  53790544 ttaacatagtgagaaaaaca 53790525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 53774918 - 53774834
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    ||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||  |||||||||||||||| ||||||||||    
T  53774918 agattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagttt 53774834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 392
Target Start/End: Original strand, 11970974 - 11971058
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    ||||| ||| |||||||| |||| |||||||||||||| | ||| | |||||||||  |||||||||||||||| ||||||||||    
T  11970974 agattatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 53790872 - 53790820
Alignment:
Q  85 taaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttgg 137  Q
    ||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  53790872 taaaggaacttcctttcaacgaattgaagccaaactttcaacataatccttgg 53790820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 11981685 - 11981759
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    ||||||||||||| ||| ||||||| || | ||| | |||||||||  |||||||||||||||| ||||||||||    
T  11981685 aactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagttt 11981759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 53790729 - 53790681
Alignment:
Q  222 agcttgcgaatatcaatgtttcaccattctcagaaagacagaatgggaa 270  Q
    ||||||| ||||||| ||| |||||||||||||||||||| ||||||||    
T  53790729 agcttgccaatatcagtgtctcaccattctcagaaagacacaatgggaa 53790681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 3565812 - 3565733
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 397  Q
    ||||||||||||| |||||||||||||| | |||||  ||||||||  |||| ||||||||||  ||||  |||||||||    
T  3565812 aactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttctta 3565733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 3557794 - 3557732
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataa 380  Q
    ||||||||||||| |||||||||||||| | |||||  ||||||||  |||| ||||||||||    
T  3557794 aactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataa 3557732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 35767083 - 35767013
Alignment:
Q  321 taattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagtt 391  Q
    |||||||||||| |||| ||||||| | ||||| ||||||||||  ||| | ||||||||| |||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatgagtt 35767013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 397
Target Start/End: Original strand, 6921352 - 6921431
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 397  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||| ||||| |||||||||    
T  6921352 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctta 6921431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 6947882 - 6947993
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatggtgagaaaaacaaag 417  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| | ||| || || ||||||||   ||  || |||||||||||    
T  6947882 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttcttgaaatcatgtgaaaaacaaag 6947981  T
Q  418 gcgatccatcaa 429  Q
    || |||||||||    
T  6947982 gcaatccatcaa 6947993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 429
Target Start/End: Original strand, 24254420 - 24254539
Alignment:
Q  310 attctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatggtgagaa 409  Q
    ||||| |||||| ||||| | ||||||||||||||||||||| | |||||||||   ||| ||||||||||| ||||||||| ||||   || |||||||    
T  24254420 attctcaaaactgattttgatgaattgagtccaagattgttcgactccaaattccgacatctgccatataacaaaatgagttctcttgatatagtgagaa 24254519  T
Q  410 aaacaaaggcgatccatcaa 429  Q
    ||||||||||  ||||||||    
T  24254520 aaacaaaggcagtccatcaa 24254539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 429
Target Start/End: Complemental strand, 20770728 - 20770607
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatggtgag 407  Q
    ||||| ||| |||||||||||||||||||| |||| || | ||||| |||||||||  |||||||||||||||| |||| |||||| |||  ||  ||||    
T  20770728 agattatgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgag 20770629  T
Q  408 aaaaacaaaggcgatccatcaa 429  Q
    |||||||||  | |||||||||    
T  20770628 aaaaacaaatacaatccatcaa 20770607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 393
Target Start/End: Original strand, 6954518 - 6954596
Alignment:
Q  315 gaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagtttt 393  Q
    |||||||||||||||  |||||||||||||||| ||||| |||||||||  |||||||||| ||||| ||||| |||||    
T  6954518 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggtttt 6954596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 24254175 - 24254237
Alignment:
Q  74 gtaaatcattgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttg 136  Q
    |||||||||  |||||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  24254175 gtaaatcatcataaagaaacttattttcaacaaattgaagccaaactttcaacgtaatccttg 24254237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 397
Target Start/End: Original strand, 6935220 - 6935299
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 397  Q
    |||||||||||||||||| ||||||||||| || || |||||||||  |||||||||| |||||  |||| |||||||||    
T  6935220 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataatgggttttctta 6935299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 375
Target Start/End: Complemental strand, 17369742 - 17369675
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgcca 375  Q
    ||||||||| ||||||||||||| |||||||||||||| | ||||| |||||||||  ||||||||||    
T  17369742 agattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 397
Target Start/End: Original strand, 6942971 - 6943048
Alignment:
Q  320 ctaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 397  Q
    ||||||||||||||||| ||| |||||| ||||| |||||||||  |||||||| | ||||| ||||  |||||||||    
T  6942971 ctaattttaaggaattgcgtctaagattcttcaactccaaattccttcatttgctaaataacaaaataggttttctta 6943048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 6942814 - 6942894
Alignment:
Q  187 tttcaaactataaagaattgctttgtgttgtacacagcttgcgaatatcaatgtttcaccattctcagaaagacagaatgg 267  Q
    ||||||| |||| |||||||||| || | ||| |  | |||| ||||||||||| |||||||||||||||| ||| |||||    
T  6942814 tttcaaattatagagaattgcttggtctagtaaattgattgcaaatatcaatgtatcaccattctcagaaaaacacaatgg 6942894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 18908801 - 18908922
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttcttacgatggtgag 407  Q
    ||||| |||||||||||||| ||||||||||||||||| | || || ||||||||| ||||| | ||||||||| ||||| ||||   ||  | ||||||    
T  18908801 agattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttctctaaaacggtgag 18908900  T
Q  408 aaaaacaaaggcgatccatcaa 429  Q
    ||||||| || | |||||||||    
T  18908901 aaaaacatagacaatccatcaa 18908922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 392
Target Start/End: Original strand, 18920757 - 18920841
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    ||||| |||||||||||||| ||||||||||||||||| | || || ||||||||| ||||| | ||||||||| ||||| ||||    
T  18920757 agattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18920841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 387
Target Start/End: Original strand, 18913549 - 18913628
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatg 387  Q
    ||||| |||||||||||||| ||||||||||||||||| | || || ||||||||| ||||| | ||||||||| |||||    
T  18913549 agattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatg 18913628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 554544 - 554482
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataa 380  Q
    ||||||||||||| |||||||||||||| | || || |||| |||||||||||||||||||||    
T  554544 aactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataa 554482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 396
Target Start/End: Complemental strand, 14514968 - 14514890
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctt 396  Q
    |||||||||||||||||||||||||||| | ||||| |||||||||   ||||| ||||||||| | ||| ||||||||    
T  14514968 aactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttctt 14514890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 386
Target Start/End: Complemental strand, 25698561 - 25698507
Alignment:
Q  332 aattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaat 386  Q
    |||| ||||||||| | ||||| |||||||||| |||||||||||||||| ||||    
T  25698561 aatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 20975612 - 20975556
Alignment:
Q  332 aattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatga 388  Q
    |||||| ||||||| | ||||| |||||||||  |||||||||||||||| ||||||    
T  20975612 aattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatga 20975556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 21021047 - 21021087
Alignment:
Q  91 aacttactttcaacaaatcgaagccaaactttcaacataat 131  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  21021047 aacttactttcaacaagttgaaaccaaactttcaacataat 21021087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 4570995 - 4570921
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    ||||||||||||| |||||||||||||| | |||||  |||||||   |||||||||||||||| |||| |||||    
T  4570995 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 4570921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 10219053 - 10218979
Alignment:
Q  318 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    ||||||||||||| |||||||||||||| | |||||  |||||||   |||||||||||| ||| |||| |||||    
T  10219053 aactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaatcagttt 10218979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 397
Target Start/End: Complemental strand, 27618569 - 27618480
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 397  Q
    ||||||||| |||||| |||||| || ||||||||||| | ||||| ||| | ||||  ||||| ||||||||| |||||||||| ||||    
T  27618569 agattctgataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagtttgctta 27618480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 11339435 - 11339495
Alignment:
Q  332 aattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    |||||||||||||||| || ||||||||| ||  |||||||||||||||| || |||||||    
T  11339435 aattgagtccaagattcttgaaatccaaactcgctcatttgccatataacaaattgagttt 11339495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 11345117 - 11345177
Alignment:
Q  332 aattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    |||||||||||||||| || ||||||||| |||  ||||||||||||||| || |||||||    
T  11345117 aattgagtccaagattcttgaaatccaaactcttccatttgccatataacaaattgagttt 11345177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 11338592 - 11338641
Alignment:
Q  332 aattgagtccaagattgttcaaatccaaattctatcatttgccatataac 381  Q
    ||||||| |||||||| || ||||||||| ||| ||||||||||||||||    
T  11338592 aattgagaccaagattcttgaaatccaaactctttcatttgccatataac 11338641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 27618765 - 27618720
Alignment:
Q  91 aacttactttcaacaaatcgaagccaaactttcaacataatccttg 136  Q
    ||||||||||||| |||| ||| |||| ||||||||||||||||||    
T  27618765 aacttactttcaagaaattgaaaccaagctttcaacataatccttg 27618720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 11358995 - 11359055
Alignment:
Q  332 aattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 392  Q
    |||||||||||||||| || |||||| |  ||| |||||||||||||||| || |||||||    
T  11358995 aattgagtccaagattcttgaaatcccatctctttcatttgccatataacaaattgagttt 11359055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 3625812 - 3625740
Alignment:
Q  308 agattctgaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataa 380  Q
    ||||| ||| ||||||||||||| |||||||||||||| | |||||  |||||||   |||||||||||||||    
T  3625812 agattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 4424 - 4481
Alignment:
Q  74 gtaaatcattgtaaagaaacttactttcaacaaatcgaagccaaactttcaacataat 131  Q
    |||||||||||||||| ||||||||||||||||   |||  ||| |||||||||||||    
T  4424 gtaaatcattgtaaaggaacttactttcaacaataagaaatcaagctttcaacataat 4481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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