View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7610_low_4 (Length: 317)
Name: NF7610_low_4
Description: NF7610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7610_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 18661808 - 18662101
Alignment:
| Q |
14 |
atatggtgaatgaaaatgcgttgtcgccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactga |
113 |
Q |
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| T |
18661808 |
atatggcgaatgaaaatgcgttgtcgccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactga |
18661907 |
T |
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| Q |
114 |
gagagaggatccttttatcaaagatgatacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagccatttta |
213 |
Q |
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| T |
18661908 |
gagagaggatccttttatcaaagatgatacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagccatttta |
18662007 |
T |
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| Q |
214 |
ttagttaattattgttgttgcaattgtaatgtaactatgtaagtatatatagtgtgtatgagtgtatgctttatttgttgaaggtgatgtccat |
307 |
Q |
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| T |
18662008 |
ttagttaattattgttgttgcaattgcaatgtaactatgtaagtatatatagtgtgtatgagtgtatgctttatttgttgaaggtgatgtccat |
18662101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 21132731 - 21132930
Alignment:
| Q |
46 |
tgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatgatacag |
145 |
Q |
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| T |
21132731 |
tgatagaatccagcagagaaagttccctttgaagaaacaattacatcttctgcatgtttctctactgagagagaagagccttttttcaaagatgataaat |
21132830 |
T |
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| Q |
146 |
aggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagccattttattagttaattattgttgttgcaattgtaatgt |
245 |
Q |
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| T |
21132831 |
gagatgaacattggaagggaaatagaaagaagattaggaaaatatgtgaaattttgaaaaccatgttattagttaattattgttcttgcaattgcaatgt |
21132930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 21127400 - 21127661
Alignment:
| Q |
40 |
ccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatg |
139 |
Q |
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| T |
21127400 |
ccaacttgatagaatccagcagagaaagttccctttgaagaaacagttacatcttctgcatgtttctctactgagagagaagagccctttttcaaagatg |
21127499 |
T |
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| Q |
140 |
atacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagccattttattagttaattattgttgttgcaattg |
239 |
Q |
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| T |
21127500 |
ataaatgagatgaacattgaaagggaaatagaaagaagattaggaaaatatgtgaaattttgaaaaccatgttattagttaattattgttcttgcaattg |
21127599 |
T |
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| Q |
240 |
taatgtaactatgtaagtatatatagtgtgtatgag-tgtatgctttatttgttgaaggtgatgt |
303 |
Q |
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| T |
21127600 |
caatgtaa-gctgta--tatacagtgtgtgtgtgagttgtatgctttagttgttgaaggtgatgt |
21127661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 21119990 - 21120180
Alignment:
| Q |
14 |
atatggtgaatgaaaatgcgttgtcgccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactga |
113 |
Q |
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| T |
21119990 |
atatggcgaaggaaaaagcattttcaccaatttgataaaaaccagcagagaaagtgccatttgaagagacaattacatcttctgtatgtttctctacaga |
21120089 |
T |
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| Q |
114 |
gagagaggatccttttatcaaagatgatacagaggaggaac---attggaagggaaatagcaacatgactaccaaaatatgtgaaattgtg |
201 |
Q |
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| T |
21120090 |
gagagaagatcccttgttcaaagatgatacagaagatgaacaatattggaagggaaatagcaacaagactaaaaaaatatatgatattgtg |
21120180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 247
Target Start/End: Complemental strand, 39120254 - 39120049
Alignment:
| Q |
40 |
ccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatg |
139 |
Q |
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| T |
39120254 |
ccaacttgaaagaagccagctgagaacattccatttgaagaaacaattacatcttcagcatacttctctactgaaagagaggaccctttgttcaatgatg |
39120155 |
T |
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| Q |
140 |
atacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagccattttattagttaatt-attgttgttgcaatt |
238 |
Q |
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| T |
39120154 |
ataatgaagatgaacattggaagggaaataacaagtaggctaggaaaaaatatgaaattgtgaaagcca---tgttagttaattgtttgttgttgcaatt |
39120058 |
T |
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| Q |
239 |
gtaatgtaa |
247 |
Q |
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| T |
39120057 |
gcaatgtaa |
39120049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 247
Target Start/End: Complemental strand, 39129987 - 39129782
Alignment:
| Q |
40 |
ccaatttgatagaagccagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatg |
139 |
Q |
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|||| |||| |||||||||| ||||| | || |||||||| |||||||||||||| | || ||||||||||| |||||||| ||||| |||| |||| |
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| T |
39129987 |
ccaacttgaaagaagccagctgagaacattccatttgaagaaacaattacatcttcagcatacttctctactgaaagagaggaccctttgttcaatgatg |
39129888 |
T |
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| Q |
140 |
atacagaggaggaacattggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagccattttattagttaatt-attgttgttgcaatt |
238 |
Q |
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| T |
39129887 |
ataatgaagatgaacattggaagggaaataacaagtaggctaggaaaaaatatgaaattgtgaaagcca---tgttagttaattgtttgttgttgcaatt |
39129791 |
T |
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| Q |
239 |
gtaatgtaa |
247 |
Q |
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| T |
39129790 |
gcaatgtaa |
39129782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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