View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7610_low_6 (Length: 284)
Name: NF7610_low_6
Description: NF7610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7610_low_6 |
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| [»] scaffold1408 (1 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 269
Target Start/End: Original strand, 33057053 - 33057319
Alignment:
| Q |
3 |
ccgcaactctcgacctccaaaccttccacctcaaaaaatttaaattctatttttccaaattcatgacaggaatacccgaggtactctcggggtaagtaga |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33057053 |
ccgcaactctcgacctccaaaccttccacctcaaaaaattttaattctatttttccaaattcatgacaggaatacccggggtactctcggggtaagtaga |
33057152 |
T |
|
| Q |
103 |
taatccataggtgacttgatttggtggtaacaagactgagatttactggaactctcatattcaacaacctctcattggaatcaatacgcttgaaagccag |
202 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33057153 |
taatccataggtgacttgatttggtcgtaacaagactgagctttactggaactctcattttcaacaacctctcattggaatcaatacgcttgaaagccag |
33057252 |
T |
|
| Q |
203 |
atacatcaacttcgacgaacaaaaactttcacgatagggtgccgtcgtaaatgctgcacaacataca |
269 |
Q |
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|| |||||||| ||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33057253 |
attcatcaactccgaggaataaaaaatttcacgatagggtgccatcgtaaatgctgcacaacataca |
33057319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 33304050 - 33304103
Alignment:
| Q |
85 |
actctcggggtaagtagataatccataggtgacttgatttggtggtaacaagac |
138 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
33304050 |
actctcgggggaagtagattatccataggtgacttgatttggtcataacaagac |
33304103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 33387726 - 33387779
Alignment:
| Q |
85 |
actctcggggtaagtagataatccataggtgacttgatttggtggtaacaagac |
138 |
Q |
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||||||| || |||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
33387726 |
actctcgtgggaagtagattatccataggtgacttgatttggtcgtaacaagac |
33387779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 33644992 - 33644941
Alignment:
| Q |
87 |
tctcggggtaagtagataatccataggtgacttgatttggtggtaacaagac |
138 |
Q |
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||||| || |||||||| ||||||||||||||||||||||| |||| ||||| |
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| T |
33644992 |
tctcgagggaagtagattatccataggtgacttgatttggtcgtaataagac |
33644941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 33409538 - 33409590
Alignment:
| Q |
85 |
actctcggggtaagtagataatccataggtgacttgatttggtggtaacaaga |
137 |
Q |
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|||||||||| ||||||| | ||||||||||||||||||||| |||| |||| |
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| T |
33409538 |
actctcgggggaagtagactagccataggtgacttgatttggttgtaataaga |
33409590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 202 - 246
Alignment:
| Q |
83 |
gtactctcggggtaagtagataatccataggtgacttgatttggt |
127 |
Q |
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|||||||||||| ||||||| | ||||||||||||||||||||| |
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| T |
202 |
gtactctcggggaaagtagactagccataggtgacttgatttggt |
246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 5948 - 5992
Alignment:
| Q |
83 |
gtactctcggggtaagtagataatccataggtgacttgatttggt |
127 |
Q |
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|||||||||||| ||||||| | ||||||||||||||||||||| |
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| T |
5948 |
gtactctcggggaaagtagactagccataggtgacttgatttggt |
5992 |
T |
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