View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7610_low_9 (Length: 235)

Name: NF7610_low_9
Description: NF7610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7610_low_9
NF7610_low_9
[»] scaffold0576 (2 HSPs)
scaffold0576 (29-220)||(3169-3355)
scaffold0576 (1-34)||(3180-3213)
[»] chr7 (2 HSPs)
chr7 (29-220)||(2753174-2753367)
chr7 (1-34)||(2753323-2753356)
[»] chr6 (2 HSPs)
chr6 (29-220)||(15358195-15358388)
chr6 (1-34)||(15358206-15358239)
[»] chr8 (2 HSPs)
chr8 (29-220)||(3732727-3732921)
chr8 (1-34)||(3732738-3732771)
[»] chr2 (1 HSPs)
chr2 (29-220)||(28656964-28657160)
[»] chr1 (1 HSPs)
chr1 (29-220)||(20263133-20263328)
[»] scaffold0002 (2 HSPs)
scaffold0002 (158-218)||(289553-289613)
scaffold0002 (158-218)||(282618-282678)
[»] chr4 (1 HSPs)
chr4 (158-218)||(18198184-18198244)


Alignment Details
Target: scaffold0576 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 3355 - 3169
Alignment:
Q  29 tggtacagcagatgcagcgcaaaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaatc 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3355 tggtacagcagatgcagcgcacaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaatc 3256  T
Q  129 tggaggatctcatgnnnnnnnnnnnnnnngagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggtacc 220  Q
    ||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255 tggaggatctcatg-----aaaaaaaaaagagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggtacc 3169  T

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Target: scaffold0576; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3180 - 3213
Alignment:
Q  1 aaattctacttcaatacatacaaaaaattggtac 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  3180 aaattctacttcaatacatacaataaattggtac 3213  T

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Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 2753174 - 2753367
Alignment:
Q  29 tggtacagcagatgcagcgcaaaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaatc 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2753174 tggtacagcagatgcagcgcacaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaatc 2753273  T
Q  129 tggaggatctcatg--nnnnnnnnnnnnnnngagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggtacc 220  Q
    ||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2753274 tggaggatctcatgaaaaaaaaaaaaaaaaagagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggtacc 2753367  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2753356 - 2753323
Alignment:
Q  1 aaattctacttcaatacatacaaaaaattggtac 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  2753356 aaattctacttcaatacatacaataaattggtac 2753323  T

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Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 15358388 - 15358195
Alignment:
Q  29 tggtacagcagatgcagcgcaaaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaatc 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15358388 tggtacagcagatgcagcgcacaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaatc 15358289  T
Q  129 tggaggatctcatg--nnnnnnnnnnnnnnngagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggtacc 220  Q
    ||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15358288 tggaggatctcatgaaaaaaaaaaaaaaaaagagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggtacc 15358195  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15358206 - 15358239
Alignment:
Q  1 aaattctacttcaatacatacaaaaaattggtac 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  15358206 aaattctacttcaatacatacaataaattggtac 15358239  T

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Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 3732921 - 3732727
Alignment:
Q  29 tggtacagcagatgcagcgcaaaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaatc 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3732921 tggtacagcagatgcagcgcacaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaatc 3732822  T
Q  129 tggaggatctcatg---nnnnnnnnnnnnnnngagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggtacc 220  Q
    ||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3732821 tggaggatctcatgaaaaaaaaaaaaaaaaaagagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggtacc 3732727  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3732738 - 3732771
Alignment:
Q  1 aaattctacttcaatacatacaaaaaattggtac 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  3732738 aaattctacttcaatacatacaataaattggtac 3732771  T

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Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 28657160 - 28656964
Alignment:
Q  29 tggtacagcagatgcagcgcaaaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaatc 128  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28657160 tggtacaacagatgcagcgcaaaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaacc 28657061  T
Q  129 tgg---aggatctcatg--nnnnnnnnnnnnnnngagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggtacc 220  Q
    |||   |||||||||||                 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  28657060 tggatcaggatctcatgaagaaaaaaaaaaagaagagtaaagggagtgataagtaccaatttattgtacgtattgaagtagaatttgaaaaggtacc 28656964  T

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Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 20263328 - 20263133
Alignment:
Q  29 tggtacagcagatgcagcgcaaaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcagcagttcagtagtagcagcgcaatc 128  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  20263328 tggtacaacagatgcagcgcaaaacagcagtagcaattaggagtagcagaaccgcagcaaaagctcaaagccgcaacagttcagtagtagcagcgcaacc 20263229  T
Q  129 tgg---aggatctcatg-nnnnnnnnnnnnnnngagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggtacc 220  Q
    |||   |||||||||||                |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  20263228 tggatcaggatctcatgaagaaaaaaaaaagaagagtaaagggagtgataagtaccaatttattgtacgtattgaagtagaatttgaaaaggtacc 20263133  T

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Target: scaffold0002 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 289553 - 289613
Alignment:
Q  158 gagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggta 218  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| | ||||||||||    
T  289553 gagtaaagggagtgataagtaccaatttattgtacatattgaagtagattatgaagaggta 289613  T

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Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 282618 - 282678
Alignment:
Q  158 gagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggta 218  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| | | ||||||||    
T  282618 gagtaaagggagtgataagtaccaatttattgtacatattgaagtagattataaagaggta 282678  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 18198244 - 18198184
Alignment:
Q  158 gagtaaagggagtgataagtaccaatttattgtatgtattgaagtagaatttgaagaggta 218  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| | ||||||||||    
T  18198244 gagtaaagggagtgataagtaccaatttattgtacatattgaagtagattatgaagaggta 18198184  T

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