View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7611_high_2 (Length: 326)
Name: NF7611_high_2
Description: NF7611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7611_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 22990262 - 22989952
Alignment:
| Q |
1 |
ttgccgcccaagcttccactagattatgttcagtctactcttgaatattcagattcagatatcatggagggggagtcgcgaatcacacttaactgtccca |
100 |
Q |
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| T |
22990262 |
ttgccacccgagcttcctccagattatgttcagtctactcttgaatattcagattcagatatcatggagggggagtcgcgaatctcacttaactgtccca |
22990163 |
T |
|
| Q |
101 |
taggattgacacgaatcaagactcctgttaaagggcgcacatgcaaacacttccagtgtttcgattttgacaacttcattgaaataaattgtaacaggcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22990162 |
taggattgacacgaatcaagactcctgttaaagggcgcacatgcaaacacttccagtgcttcgattttgacaacttcattgaaataaattgttacaggcc |
22990063 |
T |
|
| Q |
201 |
gcactggcgctgtcgccattgcaatgagtatgtctcctatacagatatttgtcttgacagaaacatggttgagatcctgaaaaaagttggtgagaatgtt |
300 |
Q |
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| T |
22990062 |
gctctggcgctgtccccattgcaatgagtatgtctcctatacagatatttgtcttgacagaaacatggttgagatcctgaaaaaagttggtgagaacgtt |
22989963 |
T |
|
| Q |
301 |
gtggaagtgat |
311 |
Q |
| |
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| T |
22989962 |
gtggaagtgat |
22989952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 2541553 - 2541660
Alignment:
| Q |
166 |
tttgacaacttcattgaaataaattgtaacaggccgcactggcgctgtcgccattgcaatgagtatgtctcctatacagatatttgtcttgacagaaaca |
265 |
Q |
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||||||||||||||| ||||||||| ||| ||||| ||||||||| | |||||||| | | ||||| ||||||||||||| ||||||||||||||| |
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| T |
2541553 |
tttgacaacttcattaaaataaattttaagaggccatcctggcgctgcccccattgcactcggcctgtctgctatacagatattcgtcttgacagaaaca |
2541652 |
T |
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| Q |
266 |
tggttgag |
273 |
Q |
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|| ||||| |
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| T |
2541653 |
tgattgag |
2541660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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