View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7611_low_1 (Length: 478)
Name: NF7611_low_1
Description: NF7611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7611_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Complemental strand, 33249276 - 33248832
Alignment:
| Q |
16 |
atagcacgcatatagatatgaatccttacaaagttactgtggaacactattatgctgttcccagggaagattatcgtagtcaaaataaaatagatattgg |
115 |
Q |
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| T |
33249276 |
atagcacgcatatagatatgaatccttacaaagttactgtgaaacactattatgctgttcccagggaagattatcgtagtcgaaataaaatagatattgg |
33249177 |
T |
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| Q |
116 |
actttcaatggttgtagatatttcagtatcaaataacgttttagnnnnnnnncagtggtgggtcctgttcatcacccttcttcaacattgcttcgtatga |
215 |
Q |
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| T |
33249176 |
actttcaatggttgtagatatttcagtatcaaataacgttttagttttat--cagtggtgggtcctgttcatcacccttcttcaacattgcttcgtatga |
33249079 |
T |
|
| Q |
216 |
ttaaagaagttgctagaacagggatttggaagggttttgagactactcatgagcatgattctgacactgggagtgtaaataacagagtagctgttgtaaa |
315 |
Q |
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| T |
33249078 |
ttaaagaagttgctagaacagggatttggaagggttttgagactactcatgagcatgattctgacactgggagtgtaaataacagagtagctgttgtaaa |
33248979 |
T |
|
| Q |
316 |
taacaatcaaaatgtattttggggagataataatgctagtgtgaatactcattaccactttcatgaatataaaattatcgatgggaatacgaatcactat |
415 |
Q |
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| T |
33248978 |
taacaatcaaaatgtattttggggagataataatgctagtgtgaatactcattaccactttcatgaatataaaattatcgatgggaatactaatcactat |
33248879 |
T |
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| Q |
416 |
cgtgaatataaaattatcaatgggaatacatcgaataaagtacttta |
462 |
Q |
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| T |
33248878 |
cgtgaatataaaattatcaatgggaatacatcgaataaagtacttta |
33248832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 462
Target Start/End: Complemental strand, 33242388 - 33242346
Alignment:
| Q |
420 |
aatataaaattatcaatgggaatacatcgaataaagtacttta |
462 |
Q |
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| T |
33242388 |
aatataaaattatcgatgggaatacatcgaataaagttcttta |
33242346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Complemental strand, 33242398 - 33242364
Alignment:
| Q |
371 |
cactttcatgaatataaaattatcgatgggaatac |
405 |
Q |
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| T |
33242398 |
cactttcatcaatataaaattatcgatgggaatac |
33242364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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