View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7611_low_2 (Length: 353)
Name: NF7611_low_2
Description: NF7611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7611_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 22990557 - 22990246
Alignment:
| Q |
18 |
acttcaatatacaaaagagtaatcatcagtccga-tagcaaaatttggttattggtggcaaaaaccgaggatattgagacatctgcatgcctgataaacc |
116 |
Q |
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| T |
22990557 |
acttcaatatacaaaagaaaaatcatcagtccgaataaaaaattttggttattggtggcagaaactgataatattgagacatctgcatgcttgataaacc |
22990458 |
T |
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| Q |
117 |
ctcagcaagtgaattttctcgtcaatggagaagcaattaacacgaggactttgcttggaatggatcatcagccacagatgcccacctgtttgaacagcat |
216 |
Q |
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| T |
22990457 |
ctcaggatgtgaattttctcgtgaatggagaagcaattaacacgaggactttgcttggaatggaccatcagccacagatgcccacttgtttgaacagcat |
22990358 |
T |
|
| Q |
217 |
gcttaaatttgggacaaa-tctttttcaagctgtcggtgaattcgatggtaattatattatacttgttgcctatatgagttatgttgatgcatcattgcc |
315 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22990357 |
gcttaaatttgggacaaattctttttcaagctgttggtgaattcgatggtaattatattatacttgttgcctatatgagttatgttgatgcatccttgcc |
22990258 |
T |
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| Q |
316 |
gcccaagcttcc |
327 |
Q |
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| T |
22990257 |
acccgagcttcc |
22990246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 2538112 - 2538189
Alignment:
| Q |
188 |
ccacagatgcccacctgtttgaacagcatgcttaaatttgggacaaatctttttcaagctgtcggtgaattcgatggt |
265 |
Q |
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| T |
2538112 |
ccacagatgcccacctgtgtgactggtatccttaaatttgggacaaatcttcttcaagctgtgggtcagttcgatggt |
2538189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 2538281 - 2538309
Alignment:
| Q |
267 |
attatattatacttgttgcctatatgagt |
295 |
Q |
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| T |
2538281 |
attatattatacttgttgcctatatgagt |
2538309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 49515576 - 49515528
Alignment:
| Q |
260 |
gatggtaattatattatacttgttgcctatatgagttatgttgatgcat |
308 |
Q |
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| T |
49515576 |
gatggtcattatattatacttgttgcttatatgaattatgttgttgcat |
49515528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 49516792 - 49516885
Alignment:
| Q |
129 |
attttctcgtcaatggagaagcaattaacacgaggactttgcttggaatggatcatcagccacagatgcccacctgtttgaacagcatgcttaa |
222 |
Q |
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| T |
49516792 |
attttctcatgaatggaaaaacaattaacacaaggactaagctttgaatggatcatggaccacagatgaccacttgtgtgaatagtatgcttaa |
49516885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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