View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7611_low_4 (Length: 258)

Name: NF7611_low_4
Description: NF7611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7611_low_4
NF7611_low_4
[»] chr8 (3 HSPs)
chr8 (168-258)||(10026957-10027047)
chr8 (12-78)||(10026809-10026876)
chr8 (12-78)||(10224438-10224505)
[»] chr1 (2 HSPs)
chr1 (168-258)||(3328483-3328573)
chr1 (12-78)||(3328329-3328396)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 10026957 - 10027047
Alignment:
Q  168 actctcaacgaagcgaatccaatcggcatcctctcacaatgaaccctaacagctctattaaaatcatgaagaatattcctaaacttataac 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10026957 actctcaacgaagcgaatccaatcggcatcctctcacaatgaaccctaacagctctattaaaatcatgaagaatattcctaaacttataac 10027047  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 10026809 - 10026876
Alignment:
Q  12 catcaaaatcaaaaccttcttcgcttt-ttcccctcaccactcttcaatcccaatccttcatcttcca 78  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10026809 catcaaaatcaaaaccttcttcgctttcttcccctcaccactcttcaatcccaatccttcatcttcca 10026876  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 10224438 - 10224505
Alignment:
Q  12 catcaaaatcaaaaccttcttcgcttt-ttcccctcaccactcttcaatcccaatccttcatcttcca 78  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10224438 catcaaaatcaaaaccttcttcgctttcttcccctcaccactcttcaatcccaatccttcatcttcca 10224505  T

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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 3328483 - 3328573
Alignment:
Q  168 actctcaacgaagcgaatccaatcggcatcctctcacaatgaaccctaacagctctattaaaatcatgaagaatattcctaaacttataac 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3328483 actctcaacgaagcgaatccaatcggcatcctctcacaatgaaccctaacagctctattaaaatcatgaagaatattcctaaacttataac 3328573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 3328329 - 3328396
Alignment:
Q  12 catcaaaatcaaaaccttcttcgcttt-ttcccctcaccactcttcaatcccaatccttcatcttcca 78  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3328329 catcaaaatcaaaaccttcttcgctttcttcccctcaccactcttcaatcccaatccttcatcttcca 3328396  T

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