View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7612_high_1 (Length: 410)
Name: NF7612_high_1
Description: NF7612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7612_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 394
Target Start/End: Complemental strand, 33371622 - 33371242
Alignment:
| Q |
14 |
agatgaaaatgacaatgttattggcgaaacgtcattaacgtgccatacggctaatggacttcctaccatggttccgctaaaaactcaattttattggcta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33371622 |
agatgaaaatgacaatgttattggcgaaacgtcattagcgtgccatacggctaatggacttcctaccatggttccgctaaaaactcaattttattggcca |
33371523 |
T |
|
| Q |
114 |
aacacattacgtgagctggtcatgacaaaatcggtcgcattaaatagcagcgctcggtggtgattgtagtggttactgtataacttttgaatccaaagga |
213 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33371522 |
aacacattacgtgagctgttcatgaaaaaatcggtcgcattaaatagcagcgctcggtggtgattgtagtggttactgtataacttttgaatccaaagga |
33371423 |
T |
|
| Q |
214 |
aacaaagtgaaaaataatataaaatttctgtaattactaatgaagatgaaaaatataaactatatttgcttacctttcttttagagcaagaaagaaatta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33371422 |
aacaaagtgaaaaataatataaaatttctgtaattactaatgaagatgaaaaatataaactatatttgcttacctttcttttagagcaagaaagaaatta |
33371323 |
T |
|
| Q |
314 |
tgataaagctaagcaaacatactgtagtcctaacaaactaaatgttaaaaacaaaaacctgcatgcagttgatgcaataag |
394 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33371322 |
tgataaagctaagcaaacataatgtagtcctaacaaactaaatgttaaaaacaaaaacctgcatgcagttgatgcaataag |
33371242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 33365296 - 33365240
Alignment:
| Q |
244 |
taattactaatgaagatgaaaaatataaactata-tttgcttacctttcttttagag |
299 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| | ||||||||| |||||||||||| |
|
|
| T |
33365296 |
taattactaacgaagatgaaaaatgtaaactacattttgcttacatttcttttagag |
33365240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 41434038 - 41433942
Alignment:
| Q |
213 |
aaacaaagtgaaaaataatataaaatttctgtaattactaatgaa----gatgaaaaatataaactatatttgcttacctttcttttagagcaagaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| || || ||||||||||||||| ||||||||| |||||||||| ||| ||||| |
|
|
| T |
41434038 |
aaacaaagtgaaaaataatataaaatttcaataattactaactaattacgacgaaaaatataaactagatttgctta-ctttcttttatagctagaaa |
41433942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 41450539 - 41450456
Alignment:
| Q |
239 |
ttctgtaattactaatgaagatgaaaaatataaactatatttgcttacctttcttttagagcaagaaagaaattatgataaagc |
322 |
Q |
| |
|
|||| |||||||||| ||||||| |||| |||||||| |||| ||| |||||||||| ||||||||||||| |||||||||| |
|
|
| T |
41450539 |
ttctataattactaacgaagatgtaaaacataaactagatttacttgtctttcttttatagcaagaaagaaaagatgataaagc |
41450456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 7761984 - 7762029
Alignment:
| Q |
349 |
aactaaatgttaaaaacaaaaacctgcatgcagttgatgcaataag |
394 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
7761984 |
aactgaatgttaaaaacaaaaacttgcatgcagttaatgtaataag |
7762029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University